Strain Fitness in Agrobacterium fabrum C58 around Atu4039

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,152,713	+		Atu4037	0.30	-0.5
1,152,721	-		Atu4037	0.30	+0.4
1,152,744	+		Atu4037	0.32	-0.1
1,152,776	+		Atu4037	0.35	+0.9
1,152,776	+		Atu4037	0.35	-1.0
1,152,776	+		Atu4037	0.35	+0.1
1,152,784	-		Atu4037	0.35	+0.2
1,152,784	-		Atu4037	0.35	-0.3
1,152,790	-		Atu4037	0.36	-0.4
1,152,790	-		Atu4037	0.36	-0.2
1,152,823	-		Atu4037	0.39	+0.4
1,152,833	-		Atu4037	0.39	+0.1
1,153,131	-		Atu4037	0.64	+0.0
1,153,131	-		Atu4037	0.64	-1.5
1,153,213	+		Atu4037	0.70	+0.7
1,153,213	+		Atu4037	0.70	-0.1
1,153,213	+		Atu4037	0.70	+2.9
1,153,221	-		Atu4037	0.71	-0.7
1,153,233	-		Atu4037	0.72	+0.1
1,153,276	-		Atu4037	0.75	-0.1
1,153,402	-		Atu4037	0.86	+0.0
1,153,404	+		Atu4037	0.86	-0.0
1,153,427	-		Atu4037	0.88	-0.4
1,153,429	-		Atu4037	0.88	-0.9
1,153,493	+				-0.1
1,153,493	+				-0.4
1,153,501	-				-0.2
1,153,501	-				+0.5
1,153,744	+		Atu4039	0.30	-0.0
1,153,744	+		Atu4039	0.30	+0.4
1,153,746	+		Atu4039	0.30	+0.1
1,153,752	-		Atu4039	0.32	+0.6
1,153,752	-		Atu4039	0.32	+0.7
1,153,752	-		Atu4039	0.32	+1.1
1,153,754	-		Atu4039	0.33	-0.1
1,153,766	-		Atu4039	0.37	-0.3
1,153,766	-		Atu4039	0.37	+0.4
1,153,790	+		Atu4039	0.45	+1.0
1,153,857	-		Atu4039	0.68	-0.1
1,153,869	+		Atu4039	0.73	-0.1
1,153,968	-				+0.9
1,154,332	-		Atu4040	0.61	-0.7
1,154,385	+		Atu4040	0.70	+1.0
1,154,483	-		Atu4040	0.85	+0.1
1,154,491	+		Atu4040	0.86	+0.2
1,154,506	-		Atu4040	0.89	-0.3
1,154,604	-				-0.0
1,154,606	-				-0.4
1,154,606	-				+0.0
1,154,609	-				+0.5
1,154,621	-				+0.3
1,154,621	-				-0.3
1,154,678	-		Atu4041	0.14	-0.4
1,154,728	-		Atu4041	0.22	-1.0
1,154,732	-		Atu4041	0.22	+1.1