Strain Fitness in Agrobacterium fabrum C58 around Atu3647

Experiment: Indole-3-pyruvic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3645 and Atu3646 overlap by 4 nucleotidesAtu3646 and Atu3647 are separated by 130 nucleotidesAtu3647 and Atu3648 are separated by 415 nucleotides Atu3645: Atu3645 - hypothetical protein, at 699,072 to 699,479 Atu3645 Atu3646: Atu3646 - hypothetical protein, at 699,476 to 699,901 Atu3646 Atu3647: Atu3647 - hypothetical protein, at 700,032 to 700,277 Atu3647 Atu3648: Atu3648 - hypothetical protein, at 700,693 to 700,914 Atu3648 Position (kb) 700 701Strain fitness (log2 ratio) -1 0 1at 699.037 kb on + strandat 699.038 kb on + strandat 699.045 kb on - strandat 699.069 kb on - strandat 699.076 kb on - strandat 699.147 kb on + strand, within Atu3645at 699.147 kb on + strand, within Atu3645at 699.178 kb on + strand, within Atu3645at 699.198 kb on + strand, within Atu3645at 699.198 kb on - strand, within Atu3645at 699.230 kb on + strand, within Atu3645at 699.254 kb on - strand, within Atu3645at 699.256 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.473 kb on + strandat 699.474 kb on - strandat 699.502 kb on - strandat 699.542 kb on - strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.557 kb on - strand, within Atu3646at 699.605 kb on + strand, within Atu3646at 699.607 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.674 kb on + strand, within Atu3646at 699.684 kb on + strand, within Atu3646at 699.719 kb on + strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.732 kb on - strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.870 kb on + strandat 699.938 kb on - strandat 699.938 kb on - strandat 699.940 kb on + strandat 699.940 kb on + strandat 699.948 kb on - strandat 699.948 kb on - strandat 699.955 kb on - strandat 700.001 kb on + strandat 700.032 kb on - strandat 700.060 kb on + strand, within Atu3647at 700.089 kb on + strand, within Atu3647at 700.096 kb on - strand, within Atu3647at 700.097 kb on - strand, within Atu3647at 700.192 kb on - strand, within Atu3647at 700.212 kb on + strand, within Atu3647at 700.218 kb on - strand, within Atu3647at 700.297 kb on + strandat 700.361 kb on + strandat 700.361 kb on + strandat 700.429 kb on + strandat 700.462 kb on + strandat 700.470 kb on - strandat 700.479 kb on + strandat 700.529 kb on + strandat 700.537 kb on - strandat 700.546 kb on + strandat 700.546 kb on + strandat 700.546 kb on + strandat 700.547 kb on - strandat 700.554 kb on - strandat 700.673 kb on - strandat 700.723 kb on - strand, within Atu3648at 700.734 kb on - strand, within Atu3648at 700.750 kb on + strand, within Atu3648at 700.759 kb on - strand, within Atu3648at 700.775 kb on - strand, within Atu3648at 700.909 kb on + strandat 700.917 kb on - strandat 700.917 kb on - strandat 700.919 kb on + strandat 700.985 kb on - strandat 701.024 kb on + strandat 701.095 kb on + strandat 701.105 kb on + strandat 701.133 kb on - strandat 701.175 kb on + strandat 701.183 kb on - strandat 701.243 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM
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699,037 + -1.1
699,038 + -0.9
699,045 - -0.0
699,069 - +0.5
699,076 - -0.1
699,147 + Atu3645 0.18 +0.2
699,147 + Atu3645 0.18 +0.3
699,178 + Atu3645 0.26 -0.2
699,198 + Atu3645 0.31 +0.0
699,198 - Atu3645 0.31 -1.4
699,230 + Atu3645 0.39 +0.1
699,254 - Atu3645 0.45 +0.1
699,256 + Atu3645 0.45 -0.8
699,275 + Atu3645 0.50 +0.7
699,275 + Atu3645 0.50 +0.4
699,473 + +0.0
699,474 - +0.5
699,502 - +1.1
699,542 - Atu3646 0.15 +0.3
699,549 + Atu3646 0.17 +1.0
699,549 + Atu3646 0.17 -0.1
699,549 + Atu3646 0.17 +1.5
699,549 + Atu3646 0.17 +0.4
699,549 + Atu3646 0.17 +1.0
699,557 - Atu3646 0.19 +0.7
699,605 + Atu3646 0.30 +0.1
699,607 - Atu3646 0.31 -0.2
699,623 - Atu3646 0.35 -0.2
699,623 - Atu3646 0.35 -0.1
699,623 - Atu3646 0.35 -0.8
699,659 + Atu3646 0.43 -0.4
699,659 + Atu3646 0.43 +0.2
699,659 + Atu3646 0.43 -0.7
699,659 + Atu3646 0.43 +0.1
699,667 - Atu3646 0.45 +0.1
699,667 - Atu3646 0.45 +1.5
699,667 - Atu3646 0.45 +0.1
699,667 - Atu3646 0.45 -0.4
699,667 - Atu3646 0.45 +0.3
699,674 + Atu3646 0.46 +0.3
699,684 + Atu3646 0.49 +0.1
699,719 + Atu3646 0.57 +0.1
699,727 - Atu3646 0.59 -0.5
699,727 - Atu3646 0.59 +0.2
699,732 - Atu3646 0.60 +0.2
699,776 + Atu3646 0.70 +1.5
699,776 + Atu3646 0.70 -0.0
699,776 + Atu3646 0.70 -0.1
699,784 - Atu3646 0.72 +1.5
699,784 - Atu3646 0.72 +0.6
699,870 + -0.5
699,938 - -0.4
699,938 - +0.1
699,940 + -0.3
699,940 + +0.2
699,948 - -0.2
699,948 - +0.1
699,955 - -0.1
700,001 + -0.6
700,032 - +1.3
700,060 + Atu3647 0.11 +0.0
700,089 + Atu3647 0.23 -0.7
700,096 - Atu3647 0.26 +1.0
700,097 - Atu3647 0.26 +1.5
700,192 - Atu3647 0.65 +0.1
700,212 + Atu3647 0.73 +0.7
700,218 - Atu3647 0.76 -0.1
700,297 + -0.1
700,361 + -1.1
700,361 + -0.6
700,429 + -0.0
700,462 + +0.2
700,470 - +0.4
700,479 + -0.1
700,529 + +0.1
700,537 - +0.6
700,546 + +0.2
700,546 + +0.2
700,546 + +0.2
700,547 - +0.4
700,554 - -0.1
700,673 - +0.3
700,723 - Atu3648 0.14 +0.3
700,734 - Atu3648 0.18 -1.5
700,750 + Atu3648 0.26 +0.1
700,759 - Atu3648 0.30 +0.1
700,775 - Atu3648 0.37 -0.2
700,909 + +0.5
700,917 - +0.3
700,917 - +0.6
700,919 + -0.4
700,985 - -0.4
701,024 + +0.5
701,095 + -0.1
701,105 + -1.6
701,133 - +1.1
701,175 + +0.1
701,183 - +0.1
701,243 + -0.7

Or see this region's nucleotide sequence