Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3568 and Atu3569 are separated by 8 nucleotides Atu3569 and Atu3570 are separated by 37 nucleotides
Atu3568: Atu3568 - hypothetical protein, at 621,079 to 623,007
Atu3568
Atu3569: Atu3569 - hypothetical protein, at 623,016 to 623,444
Atu3569
Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678
Atu3570
Position (kb) 623
624 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 622.035 kb on + strand, within Atu3568 at 622.036 kb on + strand, within Atu3568 at 622.078 kb on + strand, within Atu3568 at 622.086 kb on - strand, within Atu3568 at 622.110 kb on + strand, within Atu3568 at 622.110 kb on + strand, within Atu3568 at 622.203 kb on + strand, within Atu3568 at 622.221 kb on - strand, within Atu3568 at 622.236 kb on + strand, within Atu3568 at 622.236 kb on + strand, within Atu3568 at 622.242 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.337 kb on + strand, within Atu3568 at 622.338 kb on - strand, within Atu3568 at 622.338 kb on - strand, within Atu3568 at 622.425 kb on + strand, within Atu3568 at 622.494 kb on + strand, within Atu3568 at 622.503 kb on - strand, within Atu3568 at 622.685 kb on + strand, within Atu3568 at 622.693 kb on - strand, within Atu3568 at 622.755 kb on + strand, within Atu3568 at 622.775 kb on - strand, within Atu3568 at 622.947 kb on - strand at 623.134 kb on + strand, within Atu3569 at 623.139 kb on + strand, within Atu3569 at 623.149 kb on + strand, within Atu3569 at 623.177 kb on + strand, within Atu3569 at 623.346 kb on - strand, within Atu3569 at 623.358 kb on + strand, within Atu3569 at 623.366 kb on - strand, within Atu3569 at 623.445 kb on + strand at 623.451 kb on - strand at 623.635 kb on + strand, within Atu3570 at 623.769 kb on + strand, within Atu3570 at 623.793 kb on + strand, within Atu3570 at 623.830 kb on + strand, within Atu3570 at 623.852 kb on + strand, within Atu3570 at 623.887 kb on + strand, within Atu3570 at 623.919 kb on - strand, within Atu3570 at 624.016 kb on - strand, within Atu3570 at 624.214 kb on + strand, within Atu3570 at 624.233 kb on + strand, within Atu3570 at 624.315 kb on + strand, within Atu3570 at 624.315 kb on + strand, within Atu3570
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 622,035 + Atu3568 0.50 -0.4 622,036 + Atu3568 0.50 -0.3 622,078 + Atu3568 0.52 +2.9 622,086 - Atu3568 0.52 +0.1 622,110 + Atu3568 0.53 -0.5 622,110 + Atu3568 0.53 -0.0 622,203 + Atu3568 0.58 -0.2 622,221 - Atu3568 0.59 -0.3 622,236 + Atu3568 0.60 +0.2 622,236 + Atu3568 0.60 +0.1 622,242 + Atu3568 0.60 +0.7 622,330 + Atu3568 0.65 -0.7 622,330 + Atu3568 0.65 +0.2 622,330 + Atu3568 0.65 -2.7 622,330 + Atu3568 0.65 +1.2 622,337 + Atu3568 0.65 -0.1 622,338 - Atu3568 0.65 +0.7 622,338 - Atu3568 0.65 -0.9 622,425 + Atu3568 0.70 +0.2 622,494 + Atu3568 0.73 -2.1 622,503 - Atu3568 0.74 +0.1 622,685 + Atu3568 0.83 +0.8 622,693 - Atu3568 0.84 +0.5 622,755 + Atu3568 0.87 +0.4 622,775 - Atu3568 0.88 +0.3 622,947 - +0.2 623,134 + Atu3569 0.28 +0.6 623,139 + Atu3569 0.29 +1.0 623,149 + Atu3569 0.31 +0.3 623,177 + Atu3569 0.38 -0.4 623,346 - Atu3569 0.77 +0.1 623,358 + Atu3569 0.80 +0.8 623,366 - Atu3569 0.82 +0.6 623,445 + -0.1 623,451 - -0.5 623,635 + Atu3570 0.13 -0.2 623,769 + Atu3570 0.24 +0.4 623,793 + Atu3570 0.26 +0.1 623,830 + Atu3570 0.29 +0.2 623,852 + Atu3570 0.31 +0.6 623,887 + Atu3570 0.34 -0.2 623,919 - Atu3570 0.37 +2.7 624,016 - Atu3570 0.45 +0.1 624,214 + Atu3570 0.61 -0.7 624,233 + Atu3570 0.63 +0.0 624,315 + Atu3570 0.70 -0.4 624,315 + Atu3570 0.70 +0.0
Or see this region's nucleotide sequence