Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3509 and Atu3510 overlap by 4 nucleotides Atu3510 and Atu3511 are separated by 24 nucleotides Atu3511 and Atu3512 are separated by 12 nucleotides Atu3512 and Atu3513 are separated by 142 nucleotides
Atu3509: Atu3509 - hypothetical protein, at 559,377 to 559,805
Atu3509
Atu3510: Atu3510 - amidohydrolase, at 559,802 to 560,662
Atu3510
Atu3511: Atu3511 - glutaredoxin, at 560,687 to 560,989
Atu3511
Atu3512: Atu3512 - competence protein F, at 561,002 to 561,793
Atu3512
Atu3513: Atu3513 - methyltransferase, at 561,936 to 562,817
Atu3513
Position (kb) 560
561 Strain fitness (log2 ratio) -1
0
1 at 559.824 kb on + strand at 559.852 kb on - strand at 559.966 kb on - strand, within Atu3510 at 560.136 kb on + strand, within Atu3510 at 560.144 kb on - strand, within Atu3510 at 560.320 kb on - strand, within Atu3510 at 560.508 kb on + strand, within Atu3510 at 560.650 kb on + strand at 560.658 kb on + strand at 560.672 kb on + strand at 560.679 kb on - strand at 560.758 kb on - strand, within Atu3511 at 560.774 kb on + strand, within Atu3511 at 560.876 kb on + strand, within Atu3511 at 560.945 kb on + strand, within Atu3511 at 560.953 kb on - strand, within Atu3511 at 561.040 kb on - strand at 561.188 kb on - strand, within Atu3512 at 561.291 kb on - strand, within Atu3512 at 561.296 kb on + strand, within Atu3512 at 561.371 kb on - strand, within Atu3512 at 561.382 kb on - strand, within Atu3512 at 561.433 kb on - strand, within Atu3512 at 561.509 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.686 kb on - strand, within Atu3512 at 561.686 kb on - strand, within Atu3512 at 561.758 kb on - strand at 561.760 kb on - strand at 561.839 kb on + strand at 561.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 559,824 + +0.2 559,852 - +0.1 559,966 - Atu3510 0.19 +0.1 560,136 + Atu3510 0.39 +0.0 560,144 - Atu3510 0.40 +0.3 560,320 - Atu3510 0.60 +0.6 560,508 + Atu3510 0.82 +0.8 560,650 + -0.4 560,658 + -0.5 560,672 + +0.9 560,679 - +0.5 560,758 - Atu3511 0.23 +0.9 560,774 + Atu3511 0.29 -0.0 560,876 + Atu3511 0.62 +0.5 560,945 + Atu3511 0.85 +0.2 560,953 - Atu3511 0.88 +0.1 561,040 - +0.1 561,188 - Atu3512 0.23 +0.0 561,291 - Atu3512 0.36 +0.8 561,296 + Atu3512 0.37 +0.2 561,371 - Atu3512 0.47 -0.3 561,382 - Atu3512 0.48 +0.0 561,433 - Atu3512 0.54 +0.2 561,509 + Atu3512 0.64 -0.2 561,581 + Atu3512 0.73 +0.5 561,581 + Atu3512 0.73 -0.3 561,581 + Atu3512 0.73 +0.2 561,581 + Atu3512 0.73 +0.0 561,589 - Atu3512 0.74 -0.2 561,589 - Atu3512 0.74 -0.4 561,589 - Atu3512 0.74 -0.1 561,589 - Atu3512 0.74 -0.4 561,589 - Atu3512 0.74 +0.2 561,589 - Atu3512 0.74 -0.1 561,589 - Atu3512 0.74 -0.5 561,686 - Atu3512 0.86 -0.2 561,686 - Atu3512 0.86 +0.7 561,758 - +0.1 561,760 - -0.1 561,839 + -0.5 561,912 + +0.6
Or see this region's nucleotide sequence