Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3465 and Atu3466 overlap by 7 nucleotides Atu3466 and Atu3467 are separated by 29 nucleotides Atu3467 and Atu3468 overlap by 4 nucleotides Atu3468 and Atu3469 are separated by 74 nucleotides
Atu3465: Atu3465 - metallo-beta-lactamase superfamily protein, at 513,471 to 514,766
Atu3465
Atu3466: Atu3466 - ArsR family transcriptional regulator, at 514,760 to 515,113
Atu3466
Atu3467: Atu3467 - hypothetical protein, at 515,143 to 515,517
Atu3467
Atu3468: Atu3468 - hypothetical protein, at 515,514 to 515,951
Atu3468
Atu3469: Atu3469 - phosphoglyceromutase, at 516,026 to 517,543
Atu3469
Position (kb) 515
516 Strain fitness (log2 ratio) -1
0
1 at 514.620 kb on + strand, within Atu3465 at 514.756 kb on + strand at 514.864 kb on + strand, within Atu3466 at 514.944 kb on + strand, within Atu3466 at 515.047 kb on + strand, within Atu3466 at 515.116 kb on + strand at 515.118 kb on + strand at 515.223 kb on + strand, within Atu3467 at 515.365 kb on + strand, within Atu3467 at 515.536 kb on + strand at 515.544 kb on - strand at 515.788 kb on + strand, within Atu3468 at 515.935 kb on + strand at 515.960 kb on - strand at 515.962 kb on + strand at 516.697 kb on - strand, within Atu3469
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 514,620 + Atu3465 0.89 +0.2 514,756 + -0.5 514,864 + Atu3466 0.29 +0.2 514,944 + Atu3466 0.52 +1.0 515,047 + Atu3466 0.81 -0.2 515,116 + -0.6 515,118 + -0.7 515,223 + Atu3467 0.21 -0.4 515,365 + Atu3467 0.59 +0.0 515,536 + +0.1 515,544 - -0.5 515,788 + Atu3468 0.63 +0.3 515,935 + +0.4 515,960 - +0.1 515,962 + +0.2 516,697 - Atu3469 0.44 -0.7
Or see this region's nucleotide sequence