Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3424 and Atu3425 are separated by 51 nucleotides Atu3425 and Atu3426 are separated by 154 nucleotides
Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049
Atu3424
Atu3425: Atu3425 - hypothetical protein, at 472,101 to 472,646
Atu3425
Atu3426: Atu3426 - sulfonate monooxygenase, at 472,801 to 473,970
Atu3426
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 471.177 kb on - strand at 471.254 kb on - strand, within Atu3424 at 471.254 kb on - strand, within Atu3424 at 471.285 kb on - strand, within Atu3424 at 471.289 kb on + strand, within Atu3424 at 471.358 kb on - strand, within Atu3424 at 471.470 kb on - strand, within Atu3424 at 471.550 kb on - strand, within Atu3424 at 471.623 kb on + strand, within Atu3424 at 471.626 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.701 kb on + strand, within Atu3424 at 471.721 kb on + strand, within Atu3424 at 471.726 kb on + strand, within Atu3424 at 471.729 kb on - strand, within Atu3424 at 471.815 kb on - strand, within Atu3424 at 471.842 kb on + strand, within Atu3424 at 471.864 kb on + strand, within Atu3424 at 471.867 kb on - strand, within Atu3424 at 472.165 kb on + strand, within Atu3425 at 472.260 kb on - strand, within Atu3425 at 472.275 kb on - strand, within Atu3425 at 472.403 kb on - strand, within Atu3425 at 472.414 kb on + strand, within Atu3425 at 472.425 kb on + strand, within Atu3425 at 472.497 kb on + strand, within Atu3425 at 472.523 kb on + strand, within Atu3425 at 472.655 kb on + strand at 472.681 kb on - strand at 472.932 kb on + strand, within Atu3426 at 473.005 kb on + strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.045 kb on + strand, within Atu3426 at 473.061 kb on + strand, within Atu3426 at 473.061 kb on + strand, within Atu3426 at 473.078 kb on + strand, within Atu3426 at 473.085 kb on + strand, within Atu3426 at 473.085 kb on + strand, within Atu3426 at 473.087 kb on - strand, within Atu3426 at 473.089 kb on + strand, within Atu3426 at 473.093 kb on - strand, within Atu3426 at 473.234 kb on + strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.272 kb on - strand, within Atu3426 at 473.276 kb on - strand, within Atu3426 at 473.282 kb on - strand, within Atu3426 at 473.363 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.494 kb on - strand, within Atu3426 at 473.594 kb on - strand, within Atu3426
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 471,177 - -0.1 471,254 - Atu3424 0.16 +0.4 471,254 - Atu3424 0.16 -0.8 471,285 - Atu3424 0.19 -0.2 471,289 + Atu3424 0.19 +0.5 471,358 - Atu3424 0.27 -0.1 471,470 - Atu3424 0.39 -0.8 471,550 - Atu3424 0.47 +0.2 471,623 + Atu3424 0.55 -1.7 471,626 - Atu3424 0.55 -0.0 471,631 - Atu3424 0.56 +0.3 471,631 - Atu3424 0.56 +0.0 471,701 + Atu3424 0.63 +0.1 471,721 + Atu3424 0.65 -0.2 471,726 + Atu3424 0.66 -0.1 471,729 - Atu3424 0.66 +0.1 471,815 - Atu3424 0.75 +0.1 471,842 + Atu3424 0.78 +0.7 471,864 + Atu3424 0.80 -0.4 471,867 - Atu3424 0.81 +0.6 472,165 + Atu3425 0.12 +0.1 472,260 - Atu3425 0.29 -0.3 472,275 - Atu3425 0.32 +1.9 472,403 - Atu3425 0.55 -0.3 472,414 + Atu3425 0.57 +3.3 472,425 + Atu3425 0.59 +1.5 472,497 + Atu3425 0.73 +0.3 472,523 + Atu3425 0.77 -0.1 472,655 + -0.0 472,681 - +0.1 472,932 + Atu3426 0.11 +0.0 473,005 + Atu3426 0.17 -0.1 473,008 - Atu3426 0.18 -0.1 473,008 - Atu3426 0.18 +0.4 473,008 - Atu3426 0.18 +0.7 473,045 + Atu3426 0.21 +0.1 473,061 + Atu3426 0.22 +0.3 473,061 + Atu3426 0.22 -0.4 473,078 + Atu3426 0.24 -0.0 473,085 + Atu3426 0.24 -0.4 473,085 + Atu3426 0.24 +0.2 473,087 - Atu3426 0.24 -0.5 473,089 + Atu3426 0.25 -0.7 473,093 - Atu3426 0.25 -0.3 473,234 + Atu3426 0.37 -2.4 473,241 - Atu3426 0.38 +0.4 473,241 - Atu3426 0.38 +1.0 473,272 - Atu3426 0.40 +0.3 473,276 - Atu3426 0.41 +0.1 473,282 - Atu3426 0.41 +0.2 473,363 + Atu3426 0.48 +0.2 473,368 + Atu3426 0.48 -0.2 473,368 + Atu3426 0.48 -0.2 473,494 - Atu3426 0.59 -0.1 473,594 - Atu3426 0.68 -0.4
Or see this region's nucleotide sequence