Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3148 and Atu3149 are separated by 9 nucleotides Atu3149 and Atu3150 overlap by 4 nucleotides Atu3150 and Atu3151 are separated by 257 nucleotides
Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478
Atu3148
Atu3149: Atu3149 - sugar ABC transporter permease, at 157,488 to 158,324
Atu3149
Atu3150: Atu3150 - sugar ABC transporter permease, at 158,321 to 159,181
Atu3150
Atu3151: Atu3151 - sugar ABC transporter substrate-binding protein, at 159,439 to 160,710
Atu3151
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1 at 157.395 kb on + strand at 157.485 kb on + strand at 157.512 kb on - strand at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.603 kb on + strand, within Atu3149 at 157.632 kb on + strand, within Atu3149 at 157.640 kb on - strand, within Atu3149 at 157.789 kb on + strand, within Atu3149 at 157.839 kb on - strand, within Atu3149 at 157.872 kb on - strand, within Atu3149 at 157.965 kb on - strand, within Atu3149 at 157.975 kb on - strand, within Atu3149 at 158.071 kb on + strand, within Atu3149 at 158.220 kb on - strand, within Atu3149 at 158.342 kb on - strand at 158.372 kb on - strand at 158.455 kb on - strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.580 kb on - strand, within Atu3150 at 158.687 kb on - strand, within Atu3150 at 158.778 kb on + strand, within Atu3150 at 158.783 kb on - strand, within Atu3150 at 158.925 kb on + strand, within Atu3150 at 159.007 kb on - strand, within Atu3150 at 159.057 kb on + strand, within Atu3150 at 159.111 kb on + strand at 159.119 kb on - strand at 159.253 kb on - strand at 159.285 kb on - strand at 159.380 kb on + strand at 159.382 kb on + strand at 159.431 kb on - strand at 159.444 kb on - strand at 159.446 kb on + strand at 159.454 kb on - strand at 159.599 kb on + strand, within Atu3151 at 159.621 kb on + strand, within Atu3151 at 159.682 kb on - strand, within Atu3151 at 159.753 kb on + strand, within Atu3151 at 159.795 kb on + strand, within Atu3151 at 159.803 kb on - strand, within Atu3151 at 159.826 kb on + strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.928 kb on - strand, within Atu3151 at 159.940 kb on + strand, within Atu3151 at 159.943 kb on - strand, within Atu3151 at 159.953 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.108 kb on - strand, within Atu3151
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 157,395 + +0.8 157,485 + +0.2 157,512 - +0.6 157,574 - Atu3149 0.10 -0.9 157,574 - Atu3149 0.10 -0.3 157,574 - Atu3149 0.10 -0.7 157,579 - Atu3149 0.11 +0.9 157,579 - Atu3149 0.11 +0.1 157,603 + Atu3149 0.14 +1.4 157,632 + Atu3149 0.17 -0.5 157,640 - Atu3149 0.18 -0.0 157,789 + Atu3149 0.36 +0.4 157,839 - Atu3149 0.42 -0.7 157,872 - Atu3149 0.46 -0.1 157,965 - Atu3149 0.57 +0.0 157,975 - Atu3149 0.58 +0.4 158,071 + Atu3149 0.70 +0.1 158,220 - Atu3149 0.87 +1.0 158,342 - +0.9 158,372 - -0.7 158,455 - Atu3150 0.16 +1.2 158,562 + Atu3150 0.28 +1.7 158,562 + Atu3150 0.28 -0.2 158,580 - Atu3150 0.30 -0.2 158,687 - Atu3150 0.43 -0.7 158,778 + Atu3150 0.53 +0.6 158,783 - Atu3150 0.54 -1.2 158,925 + Atu3150 0.70 +0.8 159,007 - Atu3150 0.80 +0.4 159,057 + Atu3150 0.85 -0.1 159,111 + -0.8 159,119 - -0.1 159,253 - -0.4 159,285 - -1.7 159,380 + -1.2 159,382 + +0.1 159,431 - -0.5 159,444 - -0.0 159,446 + -0.8 159,454 - +1.7 159,599 + Atu3151 0.13 +0.5 159,621 + Atu3151 0.14 +0.3 159,682 - Atu3151 0.19 -0.6 159,753 + Atu3151 0.25 +0.5 159,795 + Atu3151 0.28 +0.4 159,803 - Atu3151 0.29 -1.2 159,826 + Atu3151 0.30 -1.0 159,902 - Atu3151 0.36 +0.1 159,902 - Atu3151 0.36 -0.9 159,928 - Atu3151 0.38 +1.5 159,940 + Atu3151 0.39 +0.2 159,943 - Atu3151 0.40 -0.4 159,953 + Atu3151 0.40 -0.0 160,058 + Atu3151 0.49 +1.2 160,058 + Atu3151 0.49 -0.1 160,108 - Atu3151 0.53 +1.2
Or see this region's nucleotide sequence