Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3131 and Atu3132 are separated by 2 nucleotides Atu3132 and Atu3133 are separated by 4 nucleotides
Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171
Atu3131
Atu3132: Atu3132 - sugar ABC transporter permease, at 140,174 to 141,058
Atu3132
Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944
Atu3133
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1
2 at 139.306 kb on - strand, within Atu3131 at 139.358 kb on + strand, within Atu3131 at 139.386 kb on + strand, within Atu3131 at 139.406 kb on - strand, within Atu3131 at 139.462 kb on + strand, within Atu3131 at 139.512 kb on - strand, within Atu3131 at 139.583 kb on - strand, within Atu3131 at 139.634 kb on + strand, within Atu3131 at 139.692 kb on - strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.762 kb on + strand, within Atu3131 at 139.997 kb on - strand, within Atu3131 at 140.017 kb on - strand, within Atu3131 at 140.052 kb on + strand, within Atu3131 at 140.067 kb on - strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.131 kb on + strand at 140.237 kb on + strand at 140.302 kb on - strand, within Atu3132 at 140.357 kb on - strand, within Atu3132 at 140.423 kb on - strand, within Atu3132 at 140.451 kb on + strand, within Atu3132 at 140.482 kb on - strand, within Atu3132 at 140.580 kb on + strand, within Atu3132 at 140.616 kb on - strand, within Atu3132 at 140.638 kb on - strand, within Atu3132 at 140.680 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.747 kb on + strand, within Atu3132 at 140.850 kb on - strand, within Atu3132 at 140.928 kb on + strand, within Atu3132 at 140.950 kb on + strand, within Atu3132 at 140.986 kb on - strand at 140.988 kb on + strand at 141.001 kb on + strand at 141.035 kb on + strand at 141.069 kb on - strand at 141.207 kb on + strand, within Atu3133 at 141.210 kb on - strand, within Atu3133 at 141.325 kb on + strand, within Atu3133 at 141.359 kb on + strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.367 kb on - strand, within Atu3133 at 141.386 kb on - strand, within Atu3133 at 141.473 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.735 kb on - strand, within Atu3133 at 141.827 kb on + strand, within Atu3133 at 141.835 kb on - strand, within Atu3133 at 141.848 kb on + strand, within Atu3133
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 139,306 - Atu3131 0.21 -0.1 139,358 + Atu3131 0.26 -0.4 139,386 + Atu3131 0.29 -0.8 139,406 - Atu3131 0.30 +0.3 139,462 + Atu3131 0.36 +0.0 139,512 - Atu3131 0.40 +0.1 139,583 - Atu3131 0.47 +0.3 139,634 + Atu3131 0.51 -0.1 139,692 - Atu3131 0.56 +0.1 139,734 + Atu3131 0.60 -0.2 139,734 + Atu3131 0.60 -0.2 139,762 + Atu3131 0.63 +0.3 139,997 - Atu3131 0.84 +1.2 140,017 - Atu3131 0.86 -0.2 140,052 + Atu3131 0.89 -0.5 140,067 - +0.1 140,116 + -0.2 140,116 + +0.2 140,116 + -0.1 140,131 + +0.4 140,237 + +0.2 140,302 - Atu3132 0.14 +0.0 140,357 - Atu3132 0.21 +1.8 140,423 - Atu3132 0.28 -1.4 140,451 + Atu3132 0.31 +0.8 140,482 - Atu3132 0.35 +0.6 140,580 + Atu3132 0.46 +0.1 140,616 - Atu3132 0.50 -0.3 140,638 - Atu3132 0.52 -0.4 140,680 - Atu3132 0.57 +0.2 140,734 - Atu3132 0.63 -0.2 140,734 - Atu3132 0.63 +0.2 140,747 + Atu3132 0.65 -0.1 140,850 - Atu3132 0.76 +1.2 140,928 + Atu3132 0.85 +0.4 140,950 + Atu3132 0.88 +0.6 140,986 - +0.5 140,988 + +0.9 141,001 + +0.4 141,035 + -0.1 141,069 - +0.6 141,207 + Atu3133 0.16 -0.0 141,210 - Atu3133 0.17 +1.0 141,325 + Atu3133 0.30 -0.9 141,359 + Atu3133 0.34 -0.5 141,366 - Atu3133 0.34 -0.3 141,366 - Atu3133 0.34 +0.6 141,367 - Atu3133 0.34 +0.3 141,386 - Atu3133 0.37 +1.2 141,473 + Atu3133 0.46 -0.9 141,727 + Atu3133 0.75 +0.0 141,727 + Atu3133 0.75 +0.0 141,735 - Atu3133 0.76 -1.4 141,827 + Atu3133 0.87 -0.2 141,835 - Atu3133 0.88 +0.2 141,848 + Atu3133 0.89 +0.0
Or see this region's nucleotide sequence