Strain Fitness in Agrobacterium fabrum C58 around Atu3117

Experiment: Indole-3-pyruvic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3116 and Atu3117 are separated by 10 nucleotidesAtu3117 and Atu3118 are separated by 24 nucleotidesAtu3118 and Atu3119 are separated by 18 nucleotides Atu3116: Atu3116 - oxidoreductase, at 126,031 to 127,152 Atu3116 Atu3117: Atu3117 - hypothetical protein, at 127,163 to 128,326 Atu3117 Atu3118: Atu3118 - hypothetical protein, at 128,351 to 129,172 Atu3118 Atu3119: Atu3119 - hypothetical protein, at 129,191 to 130,426 Atu3119 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1 2 3at 126.266 kb on - strand, within Atu3116at 126.266 kb on - strand, within Atu3116at 126.408 kb on + strand, within Atu3116at 126.423 kb on + strand, within Atu3116at 126.426 kb on - strand, within Atu3116at 126.625 kb on + strand, within Atu3116at 126.665 kb on + strand, within Atu3116at 126.674 kb on + strand, within Atu3116at 126.685 kb on - strand, within Atu3116at 126.705 kb on + strand, within Atu3116at 126.713 kb on - strand, within Atu3116at 126.713 kb on - strand, within Atu3116at 126.751 kb on - strand, within Atu3116at 126.775 kb on + strand, within Atu3116at 126.780 kb on + strand, within Atu3116at 126.819 kb on + strand, within Atu3116at 126.827 kb on - strand, within Atu3116at 126.886 kb on - strand, within Atu3116at 126.967 kb on + strand, within Atu3116at 126.995 kb on + strand, within Atu3116at 126.995 kb on + strand, within Atu3116at 127.108 kb on - strandat 127.178 kb on - strandat 127.256 kb on + strandat 127.264 kb on - strandat 127.392 kb on + strand, within Atu3117at 127.394 kb on - strand, within Atu3117at 127.408 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.559 kb on - strand, within Atu3117at 127.687 kb on - strand, within Atu3117at 127.691 kb on + strand, within Atu3117at 127.753 kb on + strand, within Atu3117at 127.867 kb on + strand, within Atu3117at 127.905 kb on - strand, within Atu3117at 127.931 kb on - strand, within Atu3117at 127.946 kb on - strand, within Atu3117at 127.974 kb on - strand, within Atu3117at 128.016 kb on + strand, within Atu3117at 128.213 kb on + strandat 128.226 kb on - strandat 128.250 kb on + strandat 128.276 kb on - strandat 128.460 kb on + strand, within Atu3118at 128.468 kb on - strand, within Atu3118at 128.478 kb on - strand, within Atu3118at 128.513 kb on - strand, within Atu3118at 128.643 kb on + strand, within Atu3118at 128.643 kb on + strand, within Atu3118at 128.649 kb on + strand, within Atu3118at 128.784 kb on - strand, within Atu3118at 128.809 kb on + strand, within Atu3118at 128.837 kb on - strand, within Atu3118at 128.839 kb on - strand, within Atu3118at 128.906 kb on - strand, within Atu3118at 128.938 kb on - strand, within Atu3118at 128.959 kb on + strand, within Atu3118at 128.991 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.039 kb on - strand, within Atu3118at 129.067 kb on + strand, within Atu3118at 129.075 kb on - strand, within Atu3118at 129.162 kb on - strandat 129.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM
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126,266 - Atu3116 0.21 -0.2
126,266 - Atu3116 0.21 -0.8
126,408 + Atu3116 0.34 -0.0
126,423 + Atu3116 0.35 +1.2
126,426 - Atu3116 0.35 +3.2
126,625 + Atu3116 0.53 +0.4
126,665 + Atu3116 0.57 +0.7
126,674 + Atu3116 0.57 +1.2
126,685 - Atu3116 0.58 -0.6
126,705 + Atu3116 0.60 -0.1
126,713 - Atu3116 0.61 +0.0
126,713 - Atu3116 0.61 -0.2
126,751 - Atu3116 0.64 -1.0
126,775 + Atu3116 0.66 -0.3
126,780 + Atu3116 0.67 -0.4
126,819 + Atu3116 0.70 +0.4
126,827 - Atu3116 0.71 +0.1
126,886 - Atu3116 0.76 -0.1
126,967 + Atu3116 0.83 -0.1
126,995 + Atu3116 0.86 +0.5
126,995 + Atu3116 0.86 +0.1
127,108 - -0.8
127,178 - +0.4
127,256 + +1.6
127,264 - -0.0
127,392 + Atu3117 0.20 +0.1
127,394 - Atu3117 0.20 -0.0
127,408 + Atu3117 0.21 +0.0
127,430 + Atu3117 0.23 +0.2
127,430 + Atu3117 0.23 -0.0
127,430 + Atu3117 0.23 -0.0
127,559 - Atu3117 0.34 -0.3
127,687 - Atu3117 0.45 +0.2
127,691 + Atu3117 0.45 +0.4
127,753 + Atu3117 0.51 +1.8
127,867 + Atu3117 0.60 +0.3
127,905 - Atu3117 0.64 +0.5
127,931 - Atu3117 0.66 +0.2
127,946 - Atu3117 0.67 +0.5
127,974 - Atu3117 0.70 +0.2
128,016 + Atu3117 0.73 +1.5
128,213 + +0.2
128,226 - -0.5
128,250 + -0.1
128,276 - +1.2
128,460 + Atu3118 0.13 +0.2
128,468 - Atu3118 0.14 -0.1
128,478 - Atu3118 0.15 -0.8
128,513 - Atu3118 0.20 +0.8
128,643 + Atu3118 0.36 -0.1
128,643 + Atu3118 0.36 +0.5
128,649 + Atu3118 0.36 +0.1
128,784 - Atu3118 0.53 +0.8
128,809 + Atu3118 0.56 -1.2
128,837 - Atu3118 0.59 +1.2
128,839 - Atu3118 0.59 +0.3
128,906 - Atu3118 0.68 -1.4
128,938 - Atu3118 0.71 +0.2
128,959 + Atu3118 0.74 -0.2
128,991 + Atu3118 0.78 +0.1
129,031 + Atu3118 0.83 -0.1
129,031 + Atu3118 0.83 -0.2
129,031 + Atu3118 0.83 +0.1
129,039 - Atu3118 0.84 -0.4
129,067 + Atu3118 0.87 +0.2
129,075 - Atu3118 0.88 +0.1
129,162 - -0.4
129,291 + +0.1

Or see this region's nucleotide sequence