Strain Fitness in Agrobacterium fabrum C58 around Atu3067

Experiment: Indole-3-pyruvic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3066 and Atu3067 are separated by 24 nucleotidesAtu3067 and Atu3068 are separated by 9 nucleotidesAtu3068 and Atu3069 are separated by 24 nucleotides Atu3066: Atu3066 - resiniferatoxin-binding, phosphotriesterase-like protein, at 68,733 to 69,800 Atu3066 Atu3067: Atu3067 - hypothetical protein, at 69,825 to 70,595 Atu3067 Atu3068: Atu3068 - ribokinase, at 70,605 to 71,501 Atu3068 Atu3069: Atu3069 - hypothetical protein, at 71,526 to 72,368 Atu3069 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1 2at 68.878 kb on - strand, within Atu3066at 68.878 kb on - strand, within Atu3066at 68.943 kb on + strand, within Atu3066at 68.968 kb on - strand, within Atu3066at 69.116 kb on + strand, within Atu3066at 69.129 kb on + strand, within Atu3066at 69.315 kb on + strand, within Atu3066at 69.315 kb on + strand, within Atu3066at 69.332 kb on - strand, within Atu3066at 69.332 kb on - strand, within Atu3066at 69.339 kb on - strand, within Atu3066at 69.344 kb on - strand, within Atu3066at 69.367 kb on + strand, within Atu3066at 69.367 kb on + strand, within Atu3066at 69.417 kb on + strand, within Atu3066at 69.422 kb on + strand, within Atu3066at 69.425 kb on - strand, within Atu3066at 69.430 kb on - strand, within Atu3066at 69.466 kb on + strand, within Atu3066at 69.483 kb on + strand, within Atu3066at 69.552 kb on + strand, within Atu3066at 69.599 kb on + strand, within Atu3066at 69.878 kb on + strandat 69.910 kb on + strand, within Atu3067at 69.910 kb on + strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.935 kb on + strand, within Atu3067at 69.945 kb on + strand, within Atu3067at 70.012 kb on + strand, within Atu3067at 70.108 kb on - strand, within Atu3067at 70.130 kb on + strand, within Atu3067at 70.163 kb on + strand, within Atu3067at 70.178 kb on + strand, within Atu3067at 70.194 kb on - strand, within Atu3067at 70.366 kb on + strand, within Atu3067at 70.369 kb on - strand, within Atu3067at 70.467 kb on + strand, within Atu3067at 70.603 kb on + strandat 70.603 kb on + strandat 70.603 kb on + strandat 70.626 kb on + strandat 70.637 kb on - strandat 70.655 kb on - strandat 70.744 kb on - strand, within Atu3068at 70.786 kb on + strand, within Atu3068at 70.851 kb on + strand, within Atu3068at 70.854 kb on - strand, within Atu3068at 70.933 kb on + strand, within Atu3068at 70.940 kb on + strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 71.017 kb on + strand, within Atu3068at 71.025 kb on - strand, within Atu3068at 71.099 kb on + strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.258 kb on + strand, within Atu3068at 71.303 kb on - strand, within Atu3068at 71.331 kb on + strand, within Atu3068at 71.442 kb on - strandat 71.460 kb on + strandat 71.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM
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68,878 - Atu3066 0.14 +0.1
68,878 - Atu3066 0.14 +0.5
68,943 + Atu3066 0.20 -0.0
68,968 - Atu3066 0.22 +0.2
69,116 + Atu3066 0.36 +0.8
69,129 + Atu3066 0.37 -0.3
69,315 + Atu3066 0.54 +0.0
69,315 + Atu3066 0.54 -0.1
69,332 - Atu3066 0.56 +0.1
69,332 - Atu3066 0.56 -1.3
69,339 - Atu3066 0.57 +0.0
69,344 - Atu3066 0.57 -0.0
69,367 + Atu3066 0.59 +0.1
69,367 + Atu3066 0.59 +0.8
69,417 + Atu3066 0.64 -0.9
69,422 + Atu3066 0.65 +0.2
69,425 - Atu3066 0.65 -0.2
69,430 - Atu3066 0.65 +0.0
69,466 + Atu3066 0.69 -0.4
69,483 + Atu3066 0.70 +0.3
69,552 + Atu3066 0.77 +0.1
69,599 + Atu3066 0.81 +0.3
69,878 + +1.2
69,910 + Atu3067 0.11 +0.1
69,910 + Atu3067 0.11 +0.5
69,918 - Atu3067 0.12 +0.9
69,918 - Atu3067 0.12 +0.3
69,935 + Atu3067 0.14 -0.8
69,945 + Atu3067 0.16 -0.1
70,012 + Atu3067 0.24 +1.6
70,108 - Atu3067 0.37 +0.9
70,130 + Atu3067 0.40 -0.1
70,163 + Atu3067 0.44 +0.6
70,178 + Atu3067 0.46 -0.2
70,194 - Atu3067 0.48 +1.8
70,366 + Atu3067 0.70 +0.2
70,369 - Atu3067 0.71 +0.2
70,467 + Atu3067 0.83 +0.6
70,603 + +0.1
70,603 + -0.1
70,603 + +0.2
70,626 + +0.4
70,637 - -0.2
70,655 - +0.5
70,744 - Atu3068 0.15 +0.4
70,786 + Atu3068 0.20 +1.9
70,851 + Atu3068 0.27 +0.2
70,854 - Atu3068 0.28 +0.1
70,933 + Atu3068 0.37 -0.4
70,940 + Atu3068 0.37 -0.3
70,953 - Atu3068 0.39 +0.8
70,953 - Atu3068 0.39 +0.1
71,017 + Atu3068 0.46 -0.7
71,025 - Atu3068 0.47 -0.1
71,099 + Atu3068 0.55 -0.9
71,144 - Atu3068 0.60 -0.0
71,144 - Atu3068 0.60 -1.6
71,258 + Atu3068 0.73 +0.6
71,303 - Atu3068 0.78 +1.4
71,331 + Atu3068 0.81 -0.6
71,442 - -0.1
71,460 + +0.2
71,526 - +0.6

Or see this region's nucleotide sequence