Strain Fitness in Agrobacterium fabrum C58 around Atu2578

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
2,551,820	+		Atu2577	0.65	+1.0
2,551,833	+		Atu2577	0.66	-1.8
2,551,861	-		Atu2577	0.67	+1.0
2,551,918	-		Atu2577	0.69	-0.2
2,551,920	+		Atu2577	0.69	-0.8
2,551,920	+		Atu2577	0.69	-0.7
2,551,921	+		Atu2577	0.69	-1.2
2,551,928	-		Atu2577	0.69	-1.5
2,551,930	-		Atu2577	0.70	-1.1
2,551,940	-		Atu2577	0.70	-0.1
2,552,011	-		Atu2577	0.73	-0.8
2,552,011	-		Atu2577	0.73	+0.4
2,552,044	-		Atu2577	0.74	-1.0
2,552,053	-		Atu2577	0.74	-0.3
2,552,132	-		Atu2577	0.77	-1.5
2,552,146	-		Atu2577	0.77	-0.5
2,552,146	-		Atu2577	0.77	-1.4
2,552,146	-		Atu2577	0.77	-1.3
2,552,387	+		Atu2577	0.86	-2.6
2,552,439	-		Atu2577	0.88	-1.0
2,552,448	+		Atu2577	0.89	-0.8
2,552,480	-		Atu2577	0.90	-1.6
2,552,515	+				-0.9
2,552,515	+				-0.4
2,552,582	-				-1.3
2,552,582	-				-1.4
2,552,595	+				-0.8
2,552,603	-				+0.3
2,552,640	+				-1.2
2,552,693	-				-0.8
2,552,719	+				-0.5
2,552,791	+				-0.3
2,552,796	+				-0.5
2,552,799	-				-0.1
2,552,799	-				+0.6
2,552,799	-				-0.2
2,552,799	-				+0.7
2,552,799	-				+0.1
2,552,863	+		Atu2578	0.14	+0.0
2,553,062	+		Atu2578	0.57	+1.2
2,553,073	+		Atu2578	0.60	+0.3
2,553,081	-		Atu2578	0.61	+0.0
2,553,106	+		Atu2578	0.67	+1.1
2,553,206	+		Atu2578	0.89	+0.8
2,553,327	+				+0.4
2,553,407	+				+0.0
2,553,443	+				-0.2
2,553,443	+				-0.4
2,553,446	-				-1.1
2,553,612	-		Atu2579	0.19	-1.0
2,553,641	+		Atu2579	0.22	-0.8
2,553,641	+		Atu2579	0.22	+0.5
2,553,673	-		Atu2579	0.26	+0.1
2,553,721	+		Atu2579	0.32	+1.3
2,553,754	-		Atu2579	0.36	+0.7
2,553,754	-		Atu2579	0.36	+0.1
2,553,815	-		Atu2579	0.43	-0.1
2,553,852	-		Atu2579	0.47	+0.4
2,553,852	-		Atu2579	0.47	-0.2
2,554,034	-		Atu2579	0.68	+0.1
2,554,056	+		Atu2579	0.71	-0.1
2,554,112	-		Atu2579	0.77	-0.4
2,554,198	-		Atu2579	0.87	-0.4
2,554,225	+				+0.4