Strain Fitness in Agrobacterium fabrum C58 around Atu2187

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
2,163,181	+				-0.2
2,163,196	+				-0.3
2,163,204	-				-0.5
2,163,329	+				+0.1
2,163,763	+		Atu2187	0.36	+0.2
2,163,763	+		Atu2187	0.36	+0.2
2,163,763	+		Atu2187	0.36	+0.7
2,163,907	+		Atu2187	0.86	+0.2
2,164,045	-				-0.3
2,164,196	-		Atu2188	0.11	-0.3
2,164,214	+		Atu2188	0.13	-0.1
2,164,258	+		Atu2188	0.17	+0.1
2,164,266	-		Atu2188	0.18	-0.1
2,164,266	-		Atu2188	0.18	+0.5
2,164,360	+		Atu2188	0.26	+0.3
2,164,360	+		Atu2188	0.26	+0.5
2,164,452	-		Atu2188	0.34	-0.2
2,164,502	-		Atu2188	0.39	+0.1
2,164,568	+		Atu2188	0.45	+0.1
2,164,568	+		Atu2188	0.45	-0.1
2,164,568	+		Atu2188	0.45	+0.2
2,164,576	-		Atu2188	0.45	-0.1
2,164,752	+		Atu2188	0.61	-0.2
2,164,875	-		Atu2188	0.72	+0.6
2,164,876	-		Atu2188	0.72	-0.3
2,164,916	-		Atu2188	0.76	-0.5
2,164,931	+		Atu2188	0.77	-0.5
2,164,941	-		Atu2188	0.78	+0.2
2,164,941	-		Atu2188	0.78	-1.3