Strain Fitness in Agrobacterium fabrum C58 around Atu1954

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,920,691	+				+0.1
1,920,709	-				+0.1
1,920,714	-				-1.4
1,920,716	+				-0.5
1,920,942	-		Atu1952	0.31	+0.4
1,921,108	+		Atu1952	0.87	+0.3
1,921,160	-				-0.4
1,921,162	+				-1.1
1,921,192	+		Atu1953	0.10	+0.0
1,921,200	-		Atu1953	0.12	-1.6
1,921,200	-		Atu1953	0.12	-0.2
1,921,215	-		Atu1953	0.17	+0.1
1,921,240	+		Atu1953	0.24	+0.4
1,921,327	+		Atu1953	0.48	+0.3
1,921,327	+		Atu1953	0.48	+0.1
1,921,330	-		Atu1953	0.49	+0.0
1,921,332	+		Atu1953	0.50	+0.2
1,921,393	+		Atu1953	0.67	-0.0
1,921,417	-		Atu1953	0.74	+0.1
1,921,424	+		Atu1953	0.76	+0.2
1,921,593	-				-0.0
1,921,736	-		Atu1954	0.12	+0.4
1,921,943	+		Atu1954	0.31	-0.5
1,921,955	-		Atu1954	0.32	+1.1
1,922,123	-		Atu1954	0.48	+0.3
1,922,137	-		Atu1954	0.49	-0.2
1,922,334	+		Atu1954	0.67	+0.3
1,922,367	+		Atu1954	0.70	+0.8
1,922,369	+		Atu1954	0.70	-0.2
1,922,392	-		Atu1954	0.72	+0.4
1,922,398	-		Atu1954	0.73	+0.6
1,922,412	-		Atu1954	0.74	+0.3
1,922,469	+		Atu1954	0.79	+0.9
1,922,477	-		Atu1954	0.80	-0.7
1,922,477	-		Atu1954	0.80	+1.4
1,922,526	+		Atu1954	0.85	+0.3
1,922,631	+				-0.4
1,922,639	-				-0.2
1,922,698	-				+0.3
1,922,799	+				-0.2
1,922,807	-				-1.1
1,922,877	-				+1.1