Strain Fitness in Agrobacterium fabrum C58 around Atu1314

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,304,595	-				-0.6
1,304,640	+				+0.6
1,304,640	+				+0.2
1,304,674	+				-0.1
1,304,687	+				-0.7
1,304,982	-				-0.7
1,304,982	-				-0.2
1,305,120	+		Atu8154	0.30	-0.1
1,305,138	-		Atu8154	0.35	-2.0
1,305,179	+		Atu8154	0.46	+0.7
1,305,194	+		Atu8154	0.50	+0.4
1,305,269	+		Atu8154	0.70	-0.6
1,305,279	+		Atu8154	0.72	-0.4
1,305,386	+				+0.2
1,305,386	+				-0.3
1,305,386	+				+0.0
1,305,387	+				+0.2
1,305,395	-				+0.6
1,305,395	-				+0.1
1,305,395	-				+0.3
1,305,431	+				-0.1
1,305,451	-				+0.1
1,305,455	-				+0.1
1,305,455	-				+0.1
1,305,482	-				-0.2
1,305,601	+		Atu1314	0.10	+0.0
1,305,703	+		Atu1314	0.26	+0.2
1,305,769	-		Atu1314	0.36	+0.7
1,306,004	+		Atu1314	0.73	-0.0
1,306,014	-		Atu1314	0.74	+0.9
1,306,169	+				+0.0
1,306,169	+				+0.9
1,306,169	+				-0.0
1,306,177	-				+1.3
1,306,177	-				+0.7
1,306,215	+				-0.4
1,306,272	-				-1.6
1,306,279	-				+0.1
1,306,416	-				+1.4
1,306,442	+				+1.0
1,306,442	+				-0.4
1,306,450	-				-0.5
1,306,450	-				-0.5
1,306,450	-				-0.6
1,306,513	+				-2.6
1,306,602	+				-0.7
1,306,624	+		Atu8155	0.12	-0.0
1,306,637	+		Atu8155	0.16	-0.2
1,306,807	+		Atu8155	0.70	+2.1