Strain Fitness in Agrobacterium fabrum C58 around Atu1203

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,195,812	-		Atu1202	0.62	+0.0
1,195,817	-		Atu1202	0.62	-0.4
1,195,817	-		Atu1202	0.62	+0.1
1,195,817	-		Atu1202	0.62	+0.0
1,195,817	-		Atu1202	0.62	+1.0
1,195,839	-		Atu1202	0.64	-0.8
1,195,866	+		Atu1202	0.66	+0.2
1,195,893	-		Atu1202	0.67	-0.2
1,195,893	-		Atu1202	0.67	-0.5
1,195,895	+		Atu1202	0.68	-0.4
1,195,903	-		Atu1202	0.68	+0.3
1,196,056	+		Atu1202	0.78	+0.3
1,196,062	-		Atu1202	0.79	-0.0
1,196,069	-		Atu1202	0.79	-0.3
1,196,078	+		Atu1202	0.80	-0.4
1,196,114	-		Atu1202	0.82	+0.3
1,196,124	-		Atu1202	0.83	+0.5
1,196,144	-		Atu1202	0.84	+0.2
1,196,199	+		Atu1202	0.88	-0.7
1,196,222	-		Atu1202	0.89	-0.3
1,196,222	-		Atu1202	0.89	-0.2
1,196,255	-				+0.4
1,196,355	+				-0.5
1,196,470	-				+0.0
1,196,512	-				-0.8
1,196,548	+				+1.5
1,196,662	-				+0.3
1,196,714	-				+0.1
1,196,719	-				+0.7
1,196,719	-				-0.4
1,196,771	-		Atu1203	0.23	+0.4
1,196,788	+		Atu1203	0.29	-0.3
1,196,863	-		Atu1203	0.59	+0.8
1,196,892	-		Atu1203	0.70	+2.7
1,196,955	-				-0.5
1,196,957	+				-0.1
1,196,983	-				-0.3
1,197,004	+				+0.4
1,197,012	-				-0.3
1,197,012	-				+0.4
1,197,455	+		Atu1204	0.28	-0.7
1,197,888	+		Atu1204	0.61	-0.6
1,197,926	+		Atu1204	0.64	-0.5
1,197,926	+		Atu1204	0.64	-1.4
1,197,926	+		Atu1204	0.64	-2.7
1,197,933	-		Atu1204	0.64	-1.4
1,197,947	-		Atu1204	0.65	+0.7
1,197,947	-		Atu1204	0.65	-1.3