Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0960 and Atu0961 are separated by 258 nucleotides Atu0961 and Atu0962 are separated by 283 nucleotides
Atu0960: Atu0960 - MFS permease, at 948,711 to 949,817
Atu0960
Atu0961: Atu0961 - hypothetical protein, at 950,076 to 950,690
Atu0961
Atu0962: Atu0962 - hypothetical protein, at 950,974 to 951,378
Atu0962
Position (kb) 950
951 Strain fitness (log2 ratio) -1
0
1 at 949.161 kb on - strand, within Atu0960 at 949.182 kb on - strand, within Atu0960 at 949.219 kb on + strand, within Atu0960 at 949.311 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.402 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.587 kb on + strand, within Atu0960 at 949.595 kb on - strand, within Atu0960 at 949.600 kb on - strand, within Atu0960 at 949.602 kb on - strand, within Atu0960 at 949.629 kb on + strand, within Atu0960 at 949.678 kb on + strand, within Atu0960 at 949.707 kb on - strand at 949.711 kb on + strand at 949.719 kb on - strand at 949.736 kb on - strand at 949.784 kb on - strand at 949.784 kb on - strand at 949.866 kb on + strand at 949.874 kb on - strand at 949.905 kb on - strand at 950.161 kb on + strand, within Atu0961 at 950.291 kb on + strand, within Atu0961 at 950.301 kb on + strand, within Atu0961 at 950.405 kb on - strand, within Atu0961 at 950.429 kb on + strand, within Atu0961 at 950.462 kb on + strand, within Atu0961 at 950.613 kb on + strand, within Atu0961 at 950.621 kb on - strand, within Atu0961 at 950.740 kb on - strand at 950.756 kb on - strand at 950.916 kb on + strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.931 kb on + strand at 951.027 kb on - strand, within Atu0962 at 951.037 kb on - strand, within Atu0962 at 951.054 kb on - strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.064 kb on - strand, within Atu0962 at 951.116 kb on - strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.186 kb on + strand, within Atu0962 at 951.210 kb on - strand, within Atu0962 at 951.253 kb on - strand, within Atu0962 at 951.289 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.377 kb on - strand at 951.406 kb on + strand at 951.447 kb on + strand at 951.503 kb on + strand at 951.503 kb on + strand at 951.504 kb on + strand at 951.529 kb on - strand at 951.549 kb on + strand at 951.583 kb on + strand at 951.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 949,161 - Atu0960 0.41 -0.9 949,182 - Atu0960 0.43 -0.9 949,219 + Atu0960 0.46 -0.9 949,311 + Atu0960 0.54 +0.3 949,320 + Atu0960 0.55 -0.8 949,320 + Atu0960 0.55 +0.2 949,402 - Atu0960 0.62 +0.3 949,580 - Atu0960 0.79 -0.3 949,580 - Atu0960 0.79 -0.2 949,587 + Atu0960 0.79 -0.8 949,595 - Atu0960 0.80 +1.0 949,600 - Atu0960 0.80 -0.6 949,602 - Atu0960 0.80 -0.1 949,629 + Atu0960 0.83 -0.0 949,678 + Atu0960 0.87 +0.3 949,707 - -0.5 949,711 + +0.3 949,719 - -0.1 949,736 - +0.2 949,784 - -0.6 949,784 - +0.9 949,866 + -0.4 949,874 - +1.4 949,905 - -0.3 950,161 + Atu0961 0.14 +0.5 950,291 + Atu0961 0.35 +1.0 950,301 + Atu0961 0.37 +0.2 950,405 - Atu0961 0.53 -0.1 950,429 + Atu0961 0.57 +0.3 950,462 + Atu0961 0.63 +0.2 950,613 + Atu0961 0.87 +0.2 950,621 - Atu0961 0.89 -1.6 950,740 - +0.0 950,756 - -0.4 950,916 + +0.1 950,924 - -0.1 950,924 - -0.0 950,924 - -0.6 950,924 - -0.2 950,931 + -0.2 951,027 - Atu0962 0.13 +1.0 951,037 - Atu0962 0.16 +0.0 951,054 - Atu0962 0.20 -0.0 951,056 + Atu0962 0.20 -0.8 951,056 + Atu0962 0.20 -0.9 951,056 + Atu0962 0.20 +1.0 951,064 - Atu0962 0.22 +0.3 951,116 - Atu0962 0.35 -0.1 951,145 + Atu0962 0.42 -0.6 951,145 + Atu0962 0.42 -0.0 951,186 + Atu0962 0.52 +0.4 951,210 - Atu0962 0.58 +0.1 951,253 - Atu0962 0.69 -0.3 951,289 - Atu0962 0.78 +0.1 951,332 - Atu0962 0.88 +0.4 951,332 - Atu0962 0.88 -0.1 951,377 - +1.1 951,406 + -0.1 951,447 + -0.5 951,503 + +0.1 951,503 + -0.6 951,504 + -0.3 951,529 - +0.1 951,549 + -0.4 951,583 + +0.4 951,641 - -0.1
Or see this region's nucleotide sequence