Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0939 and Atu0940 overlap by 1 nucleotides Atu0940 and Atu0941 are separated by 97 nucleotides Atu0941 and Atu0942 are separated by 106 nucleotides
Atu0939: Atu0939 - PemI protein, at 928,967 to 929,233
Atu0939
Atu0940: Atu0940 - PemK protein, at 929,233 to 929,592
Atu0940
Atu0941: Atu0941 - hypothetical protein, at 929,690 to 929,926
Atu0941
Atu0942: Atu0942 - MFS permease, at 930,033 to 931,415
Atu0942
Position (kb) 929
930 Strain fitness (log2 ratio) -2
-1
0
1 at 928.709 kb on - strand at 928.709 kb on - strand at 928.719 kb on + strand at 928.739 kb on - strand at 928.812 kb on + strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.845 kb on - strand at 928.845 kb on - strand at 928.957 kb on - strand at 928.991 kb on + strand at 929.009 kb on - strand, within Atu0939 at 929.012 kb on - strand, within Atu0939 at 929.162 kb on - strand, within Atu0939 at 929.256 kb on + strand at 929.326 kb on + strand, within Atu0940 at 929.414 kb on + strand, within Atu0940 at 929.477 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.597 kb on + strand at 929.598 kb on + strand at 929.598 kb on + strand at 929.605 kb on - strand at 929.606 kb on - strand at 929.629 kb on - strand at 929.664 kb on - strand at 929.665 kb on + strand at 929.803 kb on + strand, within Atu0941 at 929.971 kb on + strand at 929.981 kb on - strand at 930.008 kb on + strand at 930.016 kb on - strand at 930.060 kb on + strand at 930.070 kb on + strand at 930.254 kb on - strand, within Atu0942 at 930.274 kb on + strand, within Atu0942 at 930.460 kb on - strand, within Atu0942 at 930.473 kb on + strand, within Atu0942 at 930.623 kb on - strand, within Atu0942 at 930.629 kb on - strand, within Atu0942 at 930.656 kb on + strand, within Atu0942 at 930.739 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.749 kb on + strand, within Atu0942 at 930.769 kb on - strand, within Atu0942 at 930.868 kb on - strand, within Atu0942 at 930.870 kb on - strand, within Atu0942
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 928,709 - -1.0 928,709 - -0.3 928,719 + -0.0 928,739 - -0.2 928,812 + +0.7 928,820 - -0.1 928,820 - -0.0 928,820 - +0.1 928,845 - +0.4 928,845 - -0.3 928,957 - -0.6 928,991 + -0.0 929,009 - Atu0939 0.16 -0.3 929,012 - Atu0939 0.17 +0.1 929,162 - Atu0939 0.73 +0.3 929,256 + -0.4 929,326 + Atu0940 0.26 +0.4 929,414 + Atu0940 0.50 -0.1 929,477 - Atu0940 0.68 -0.1 929,508 - Atu0940 0.76 +0.3 929,508 - Atu0940 0.76 +0.2 929,597 + -1.8 929,598 + +0.0 929,598 + -1.2 929,605 - +0.0 929,606 - +0.6 929,629 - -0.2 929,664 - -0.2 929,665 + -0.4 929,803 + Atu0941 0.48 +0.4 929,971 + +0.0 929,981 - -0.1 930,008 + -1.2 930,016 - +1.1 930,060 + -0.3 930,070 + +0.1 930,254 - Atu0942 0.16 -0.4 930,274 + Atu0942 0.17 -0.4 930,460 - Atu0942 0.31 -0.4 930,473 + Atu0942 0.32 +0.1 930,623 - Atu0942 0.43 +0.0 930,629 - Atu0942 0.43 +0.1 930,656 + Atu0942 0.45 -0.1 930,739 + Atu0942 0.51 -0.0 930,744 + Atu0942 0.51 -0.2 930,744 + Atu0942 0.51 -0.2 930,749 + Atu0942 0.52 +0.1 930,769 - Atu0942 0.53 +0.6 930,868 - Atu0942 0.60 +0.4 930,870 - Atu0942 0.61 -0.4
Or see this region's nucleotide sequence