Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0575 and Atu0576 are separated by 3 nucleotides Atu0576 and Atu0577 are separated by 34 nucleotides Atu0577 and Atu0578 overlap by 4 nucleotides Atu0578 and Atu0579 overlap by 10 nucleotides
Atu0575: Atu0575 - flagellar hook associated protein, at 560,238 to 561,716
Atu0575
Atu0576: Atu0576 - flagellar hook-associated protein, at 561,720 to 562,823
Atu0576
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1 at 560.731 kb on - strand, within Atu0575 at 560.752 kb on - strand, within Atu0575 at 560.801 kb on - strand, within Atu0575 at 560.894 kb on + strand, within Atu0575 at 560.916 kb on - strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.926 kb on - strand, within Atu0575 at 560.926 kb on - strand, within Atu0575 at 560.984 kb on - strand, within Atu0575 at 561.104 kb on - strand, within Atu0575 at 561.126 kb on + strand, within Atu0575 at 561.129 kb on + strand, within Atu0575 at 561.192 kb on - strand, within Atu0575 at 561.238 kb on + strand, within Atu0575 at 561.265 kb on + strand, within Atu0575 at 561.273 kb on - strand, within Atu0575 at 561.426 kb on + strand, within Atu0575 at 561.583 kb on - strand at 561.601 kb on + strand at 561.606 kb on + strand at 561.623 kb on + strand at 561.763 kb on - strand at 561.764 kb on + strand at 561.764 kb on + strand at 561.764 kb on + strand at 561.772 kb on - strand at 561.774 kb on + strand at 561.777 kb on - strand at 561.844 kb on + strand, within Atu0576 at 561.882 kb on - strand, within Atu0576 at 561.944 kb on + strand, within Atu0576 at 561.963 kb on + strand, within Atu0576 at 561.971 kb on - strand, within Atu0576 at 561.977 kb on + strand, within Atu0576 at 562.005 kb on + strand, within Atu0576 at 562.013 kb on - strand, within Atu0576 at 562.019 kb on + strand, within Atu0576 at 562.138 kb on + strand, within Atu0576 at 562.201 kb on + strand, within Atu0576 at 562.274 kb on + strand, within Atu0576 at 562.427 kb on - strand, within Atu0576 at 562.483 kb on + strand, within Atu0576 at 562.760 kb on + strand at 562.825 kb on - strand at 562.842 kb on + strand at 562.921 kb on + strand, within Atu0577 at 562.929 kb on - strand, within Atu0577 at 562.970 kb on + strand, within Atu0577 at 562.978 kb on - strand, within Atu0577 at 563.122 kb on + strand, within Atu0577 at 563.127 kb on + strand, within Atu0577 at 563.214 kb on - strand at 563.333 kb on + strand, within Atu0578 at 563.415 kb on + strand, within Atu0578 at 563.537 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 560,731 - Atu0575 0.33 -0.1 560,752 - Atu0575 0.35 +0.1 560,801 - Atu0575 0.38 +0.5 560,894 + Atu0575 0.44 -0.2 560,916 - Atu0575 0.46 -0.7 560,918 + Atu0575 0.46 -0.4 560,918 + Atu0575 0.46 -0.4 560,918 + Atu0575 0.46 -0.0 560,918 + Atu0575 0.46 -0.7 560,926 - Atu0575 0.47 -0.2 560,926 - Atu0575 0.47 -1.6 560,984 - Atu0575 0.50 +0.0 561,104 - Atu0575 0.59 +0.8 561,126 + Atu0575 0.60 +0.3 561,129 + Atu0575 0.60 +0.1 561,192 - Atu0575 0.65 +0.3 561,238 + Atu0575 0.68 +0.2 561,265 + Atu0575 0.69 -0.0 561,273 - Atu0575 0.70 +0.3 561,426 + Atu0575 0.80 -0.0 561,583 - +0.7 561,601 + +0.2 561,606 + -0.1 561,623 + +0.2 561,763 - -1.0 561,764 + -0.0 561,764 + -0.6 561,764 + +0.1 561,772 - -0.7 561,774 + +1.2 561,777 - -1.3 561,844 + Atu0576 0.11 -0.1 561,882 - Atu0576 0.15 +0.6 561,944 + Atu0576 0.20 -0.2 561,963 + Atu0576 0.22 +0.2 561,971 - Atu0576 0.23 -0.3 561,977 + Atu0576 0.23 +0.3 562,005 + Atu0576 0.26 +0.7 562,013 - Atu0576 0.27 -0.0 562,019 + Atu0576 0.27 -1.2 562,138 + Atu0576 0.38 +1.7 562,201 + Atu0576 0.44 +0.5 562,274 + Atu0576 0.50 +0.3 562,427 - Atu0576 0.64 +0.7 562,483 + Atu0576 0.69 -0.0 562,760 + +0.4 562,825 - -0.1 562,842 + +0.3 562,921 + Atu0577 0.18 +0.4 562,929 - Atu0577 0.21 +0.0 562,970 + Atu0577 0.32 +1.3 562,978 - Atu0577 0.35 +0.3 563,122 + Atu0577 0.77 -1.1 563,127 + Atu0577 0.78 +0.0 563,214 - -0.0 563,333 + Atu0578 0.30 -0.0 563,415 + Atu0578 0.48 -0.2 563,537 + Atu0578 0.75 +0.5 563,558 + Atu0578 0.80 -0.2 563,558 + Atu0578 0.80 -0.0 563,674 + +0.3 563,674 + -0.2 563,674 + +0.5 563,677 - -0.0 563,704 + Atu0579 0.14 -0.4 563,728 + Atu0579 0.19 -0.1 563,728 - Atu0579 0.19 +1.0 563,774 + Atu0579 0.28 -0.3 563,778 + Atu0579 0.29 -0.4
Or see this region's nucleotide sequence