Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0039 and Atu0040 overlap by 4 nucleotides Atu0040 and Atu0041 are separated by 1 nucleotides Atu0041 and Atu8115 are separated by 1 nucleotides Atu8115 and Atu0043 are separated by 22 nucleotides
Atu0039: Atu0039 - imidazoleglycerol-phosphate synthase cyclase, at 41,118 to 41,894
Atu0039
Atu0040: Atu0040 - phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase, at 41,891 to 42,634
Atu0040
Atu0041: Atu0041 - glutamine amidotransferase, at 42,636 to 43,286
Atu0041
Atu8115: Atu8115 - Hypothetical Protein, at 43,288 to 43,782
Atu8115
Atu0043: Atu0043 - imidazoleglycerol-phosphate dehydratase, at 43,805 to 44,401
Atu0043
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 41.671 kb on + strand, within Atu0039 at 41.834 kb on - strand at 41.905 kb on + strand at 41.913 kb on + strand at 42.070 kb on - strand, within Atu0040 at 42.309 kb on - strand, within Atu0040 at 42.649 kb on - strand at 42.668 kb on + strand at 42.740 kb on - strand, within Atu0041 at 42.958 kb on + strand, within Atu0041 at 42.990 kb on - strand, within Atu0041 at 43.103 kb on - strand, within Atu0041 at 43.381 kb on - strand, within Atu8115 at 43.393 kb on + strand, within Atu8115 at 43.395 kb on + strand, within Atu8115 at 43.431 kb on + strand, within Atu8115 at 43.432 kb on + strand, within Atu8115 at 43.617 kb on - strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.675 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.694 kb on + strand, within Atu8115 at 43.796 kb on + strand at 43.817 kb on + strand at 43.942 kb on + strand, within Atu0043 at 44.052 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.286 kb on - strand, within Atu0043
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 41,671 + Atu0039 0.71 -0.7 41,834 - -1.6 41,905 + +0.5 41,913 + +0.0 42,070 - Atu0040 0.24 -0.6 42,309 - Atu0040 0.56 -2.1 42,649 - -0.2 42,668 + +0.6 42,740 - Atu0041 0.16 +0.5 42,958 + Atu0041 0.49 +0.4 42,990 - Atu0041 0.54 -0.6 43,103 - Atu0041 0.72 +1.3 43,381 - Atu8115 0.19 -0.9 43,393 + Atu8115 0.21 +0.0 43,395 + Atu8115 0.22 +0.3 43,431 + Atu8115 0.29 -0.4 43,432 + Atu8115 0.29 -0.0 43,617 - Atu8115 0.66 -0.3 43,668 + Atu8115 0.77 -0.7 43,668 + Atu8115 0.77 -0.1 43,668 + Atu8115 0.77 -0.1 43,668 + Atu8115 0.77 -0.0 43,668 + Atu8115 0.77 -0.1 43,668 + Atu8115 0.77 +0.0 43,675 - Atu8115 0.78 +0.1 43,676 - Atu8115 0.78 -0.2 43,676 - Atu8115 0.78 +0.1 43,676 - Atu8115 0.78 -0.0 43,676 - Atu8115 0.78 +0.3 43,676 - Atu8115 0.78 -0.1 43,694 + Atu8115 0.82 +1.0 43,796 + -1.6 43,817 + -0.2 43,942 + Atu0043 0.23 -0.9 44,052 + Atu0043 0.41 -1.3 44,128 + Atu0043 0.54 -0.6 44,128 + Atu0043 0.54 -0.8 44,286 - Atu0043 0.81 +0.7
Or see this region's nucleotide sequence