Strain Fitness in Pseudomonas putida KT2440 around PP_3790

Experiment: carbon source 2-Deoxy-D-glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3789 and PP_3790 are separated by 69 nucleotidesPP_3790 and PP_3791 are separated by 301 nucleotides PP_3789: PP_3789 - putative Efflux transporter, at 4,317,740 to 4,318,960 _3789 PP_3790: PP_3790 - diaminopimelate epimerase, at 4,319,030 to 4,319,836 _3790 PP_3791: PP_3791 - Site-specific recombinase, phage integrase family, at 4,320,138 to 4,320,764 _3791 Position (kb) 4319 4320Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4318.065 kb on + strand, within PP_3789at 4318.065 kb on + strand, within PP_3789at 4318.066 kb on - strand, within PP_3789at 4318.111 kb on + strand, within PP_3789at 4318.112 kb on - strand, within PP_3789at 4318.112 kb on - strand, within PP_3789at 4318.166 kb on + strand, within PP_3789at 4318.172 kb on + strand, within PP_3789at 4318.173 kb on - strand, within PP_3789at 4318.173 kb on - strand, within PP_3789at 4318.173 kb on - strand, within PP_3789at 4318.173 kb on - strand, within PP_3789at 4318.240 kb on + strand, within PP_3789at 4318.241 kb on - strand, within PP_3789at 4318.241 kb on - strand, within PP_3789at 4318.241 kb on - strand, within PP_3789at 4318.403 kb on + strand, within PP_3789at 4318.403 kb on + strand, within PP_3789at 4318.403 kb on + strand, within PP_3789at 4318.404 kb on - strand, within PP_3789at 4318.405 kb on + strand, within PP_3789at 4318.405 kb on + strand, within PP_3789at 4318.406 kb on - strand, within PP_3789at 4318.406 kb on - strand, within PP_3789at 4318.406 kb on - strand, within PP_3789at 4318.424 kb on - strand, within PP_3789at 4318.475 kb on + strand, within PP_3789at 4318.475 kb on + strand, within PP_3789at 4318.476 kb on - strand, within PP_3789at 4318.499 kb on - strand, within PP_3789at 4318.499 kb on - strand, within PP_3789at 4318.499 kb on - strand, within PP_3789at 4318.571 kb on + strand, within PP_3789at 4318.572 kb on - strand, within PP_3789at 4318.663 kb on + strand, within PP_3789at 4318.663 kb on + strand, within PP_3789at 4318.727 kb on + strand, within PP_3789at 4318.733 kb on + strand, within PP_3789at 4318.733 kb on + strand, within PP_3789at 4318.733 kb on + strand, within PP_3789at 4318.733 kb on + strand, within PP_3789at 4318.733 kb on + strand, within PP_3789at 4318.734 kb on - strand, within PP_3789at 4318.734 kb on - strand, within PP_3789at 4318.772 kb on + strand, within PP_3789at 4318.836 kb on + strand, within PP_3789at 4318.836 kb on + strand, within PP_3789at 4318.836 kb on + strand, within PP_3789at 4318.837 kb on - strand, within PP_3789at 4318.839 kb on + strandat 4318.839 kb on + strandat 4318.840 kb on - strandat 4318.958 kb on + strandat 4318.958 kb on + strandat 4318.958 kb on + strandat 4318.959 kb on - strandat 4318.959 kb on - strandat 4318.969 kb on + strandat 4319.025 kb on - strandat 4319.028 kb on + strandat 4319.028 kb on + strandat 4319.028 kb on + strandat 4319.029 kb on - strandat 4319.029 kb on - strandat 4319.042 kb on - strandat 4319.046 kb on - strandat 4319.073 kb on + strandat 4319.073 kb on + strandat 4319.074 kb on - strandat 4319.074 kb on - strandat 4319.160 kb on + strandat 4319.160 kb on + strand, within PP_3790at 4319.207 kb on + strand, within PP_3790at 4319.254 kb on + strand, within PP_3790at 4319.255 kb on - strand, within PP_3790at 4319.255 kb on - strand, within PP_3790at 4319.268 kb on - strand, within PP_3790at 4319.285 kb on - strand, within PP_3790at 4319.310 kb on + strand, within PP_3790at 4319.311 kb on - strand, within PP_3790at 4319.343 kb on + strand, within PP_3790at 4319.344 kb on - strand, within PP_3790at 4319.398 kb on + strand, within PP_3790at 4319.631 kb on - strand, within PP_3790at 4319.694 kb on + strand, within PP_3790at 4319.694 kb on + strand, within PP_3790at 4319.694 kb on + strand, within PP_3790at 4319.694 kb on + strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.695 kb on - strand, within PP_3790at 4319.756 kb on + strandat 4319.782 kb on - strandat 4319.799 kb on - strandat 4319.867 kb on + strandat 4319.867 kb on + strandat 4319.868 kb on - strandat 4319.901 kb on - strandat 4319.901 kb on - strandat 4319.901 kb on - strandat 4319.901 kb on - strandat 4319.904 kb on + strandat 4319.904 kb on + strandat 4319.904 kb on + strandat 4319.904 kb on + strandat 4319.940 kb on + strandat 4320.003 kb on + strandat 4320.004 kb on - strandat 4320.021 kb on + strandat 4320.022 kb on - strandat 4320.115 kb on - strandat 4320.115 kb on - strandat 4320.115 kb on - strandat 4320.193 kb on + strandat 4320.218 kb on + strand, within PP_3791at 4320.219 kb on - strand, within PP_3791at 4320.219 kb on - strand, within PP_3791at 4320.266 kb on - strand, within PP_3791at 4320.284 kb on + strand, within PP_3791at 4320.285 kb on - strand, within PP_3791at 4320.285 kb on - strand, within PP_3791at 4320.285 kb on - strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.307 kb on + strand, within PP_3791at 4320.308 kb on - strand, within PP_3791at 4320.308 kb on - strand, within PP_3791at 4320.308 kb on - strand, within PP_3791at 4320.308 kb on - strand, within PP_3791at 4320.311 kb on + strand, within PP_3791at 4320.311 kb on + strand, within PP_3791at 4320.311 kb on + strand, within PP_3791at 4320.311 kb on + strand, within PP_3791at 4320.311 kb on + strand, within PP_3791at 4320.312 kb on - strand, within PP_3791at 4320.312 kb on - strand, within PP_3791at 4320.321 kb on + strand, within PP_3791at 4320.322 kb on - strand, within PP_3791at 4320.329 kb on + strand, within PP_3791at 4320.330 kb on - strand, within PP_3791at 4320.330 kb on - strand, within PP_3791at 4320.362 kb on - strand, within PP_3791at 4320.441 kb on + strand, within PP_3791at 4320.442 kb on - strand, within PP_3791at 4320.453 kb on + strand, within PP_3791at 4320.453 kb on + strand, within PP_3791at 4320.476 kb on + strand, within PP_3791at 4320.477 kb on - strand, within PP_3791at 4320.490 kb on - strand, within PP_3791at 4320.591 kb on + strand, within PP_3791at 4320.591 kb on + strand, within PP_3791at 4320.591 kb on + strand, within PP_3791at 4320.630 kb on + strand, within PP_3791at 4320.664 kb on - strand, within PP_3791at 4320.680 kb on + strand, within PP_3791at 4320.681 kb on - strand, within PP_3791at 4320.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source 2-Deoxy-D-glucose 10 mM
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4,318,065 + PP_3789 0.27 +0.5
4,318,065 + PP_3789 0.27 +0.2
4,318,066 - PP_3789 0.27 -3.0
4,318,111 + PP_3789 0.30 -0.5
4,318,112 - PP_3789 0.30 -3.1
4,318,112 - PP_3789 0.30 -3.2
4,318,166 + PP_3789 0.35 +1.6
4,318,172 + PP_3789 0.35 -0.2
4,318,173 - PP_3789 0.35 -2.4
4,318,173 - PP_3789 0.35 -4.6
4,318,173 - PP_3789 0.35 -2.0
4,318,173 - PP_3789 0.35 -4.3
4,318,240 + PP_3789 0.41 +0.2
4,318,241 - PP_3789 0.41 -2.9
4,318,241 - PP_3789 0.41 -3.8
4,318,241 - PP_3789 0.41 -3.3
4,318,403 + PP_3789 0.54 -0.4
4,318,403 + PP_3789 0.54 +0.6
4,318,403 + PP_3789 0.54 -0.5
4,318,404 - PP_3789 0.54 -3.3
4,318,405 + PP_3789 0.54 +1.6
4,318,405 + PP_3789 0.54 -2.2
4,318,406 - PP_3789 0.55 -2.8
4,318,406 - PP_3789 0.55 -1.8
4,318,406 - PP_3789 0.55 -2.6
4,318,424 - PP_3789 0.56 -4.4
4,318,475 + PP_3789 0.60 -1.5
4,318,475 + PP_3789 0.60 -0.0
4,318,476 - PP_3789 0.60 -4.5
4,318,499 - PP_3789 0.62 -2.2
4,318,499 - PP_3789 0.62 -0.4
4,318,499 - PP_3789 0.62 -3.8
4,318,571 + PP_3789 0.68 +2.2
4,318,572 - PP_3789 0.68 +0.6
4,318,663 + PP_3789 0.76 +1.0
4,318,663 + PP_3789 0.76 +1.7
4,318,727 + PP_3789 0.81 -1.0
4,318,733 + PP_3789 0.81 -0.4
4,318,733 + PP_3789 0.81 -1.2
4,318,733 + PP_3789 0.81 -0.0
4,318,733 + PP_3789 0.81 +0.6
4,318,733 + PP_3789 0.81 -1.5
4,318,734 - PP_3789 0.81 -3.5
4,318,734 - PP_3789 0.81 -2.4
4,318,772 + PP_3789 0.85 +1.4
4,318,836 + PP_3789 0.90 +1.2
4,318,836 + PP_3789 0.90 +1.6
4,318,836 + PP_3789 0.90 +1.4
4,318,837 - PP_3789 0.90 +0.6
4,318,839 + +1.0
4,318,839 + -0.3
4,318,840 - -2.8
4,318,958 + +0.2
4,318,958 + +0.9
4,318,958 + -0.4
4,318,959 - -2.5
4,318,959 - -2.4
4,318,969 + +0.6
4,319,025 - -2.0
4,319,028 + -2.2
4,319,028 + +0.6
4,319,028 + -2.0
4,319,029 - -2.8
4,319,029 - -1.4
4,319,042 - -3.8
4,319,046 - -4.3
4,319,073 + -5.5
4,319,073 + -2.6
4,319,074 - +0.6
4,319,074 - -2.6
4,319,160 + +0.6
4,319,160 + PP_3790 0.16 -2.4
4,319,207 + PP_3790 0.22 -3.3
4,319,254 + PP_3790 0.28 -3.1
4,319,255 - PP_3790 0.28 +0.6
4,319,255 - PP_3790 0.28 -4.9
4,319,268 - PP_3790 0.29 -3.6
4,319,285 - PP_3790 0.32 -2.2
4,319,310 + PP_3790 0.35 -3.3
4,319,311 - PP_3790 0.35 -1.8
4,319,343 + PP_3790 0.39 -3.1
4,319,344 - PP_3790 0.39 -4.1
4,319,398 + PP_3790 0.46 +1.6
4,319,631 - PP_3790 0.74 -3.0
4,319,694 + PP_3790 0.82 -5.8
4,319,694 + PP_3790 0.82 -3.8
4,319,694 + PP_3790 0.82 -3.3
4,319,694 + PP_3790 0.82 -5.0
4,319,695 - PP_3790 0.82 -5.9
4,319,695 - PP_3790 0.82 -4.5
4,319,695 - PP_3790 0.82 -4.1
4,319,695 - PP_3790 0.82 -4.0
4,319,695 - PP_3790 0.82 -4.3
4,319,695 - PP_3790 0.82 -3.9
4,319,756 + -2.9
4,319,782 - -2.0
4,319,799 - -4.5
4,319,867 + -1.1
4,319,867 + +2.2
4,319,868 - +1.5
4,319,901 - +1.2
4,319,901 - +1.4
4,319,901 - -1.0
4,319,901 - +1.9
4,319,904 + +0.0
4,319,904 + +2.9
4,319,904 + -1.6
4,319,904 + +2.2
4,319,940 + -2.2
4,320,003 + +0.7
4,320,004 - -1.5
4,320,021 + -0.6
4,320,022 - +0.8
4,320,115 - -0.5
4,320,115 - -0.1
4,320,115 - +3.2
4,320,193 + +0.6
4,320,218 + PP_3791 0.13 +1.0
4,320,219 - PP_3791 0.13 +1.6
4,320,219 - PP_3791 0.13 -1.2
4,320,266 - PP_3791 0.20 -0.1
4,320,284 + PP_3791 0.23 -0.2
4,320,285 - PP_3791 0.23 -0.3
4,320,285 - PP_3791 0.23 +0.8
4,320,285 - PP_3791 0.23 +0.2
4,320,307 + PP_3791 0.27 +3.2
4,320,307 + PP_3791 0.27 -0.4
4,320,307 + PP_3791 0.27 +0.4
4,320,307 + PP_3791 0.27 -0.9
4,320,307 + PP_3791 0.27 +0.6
4,320,307 + PP_3791 0.27 +1.2
4,320,308 - PP_3791 0.27 -1.1
4,320,308 - PP_3791 0.27 +1.0
4,320,308 - PP_3791 0.27 +0.7
4,320,308 - PP_3791 0.27 +1.4
4,320,311 + PP_3791 0.28 +1.3
4,320,311 + PP_3791 0.28 -1.6
4,320,311 + PP_3791 0.28 -2.5
4,320,311 + PP_3791 0.28 +0.2
4,320,311 + PP_3791 0.28 +2.9
4,320,312 - PP_3791 0.28 -0.4
4,320,312 - PP_3791 0.28 +0.4
4,320,321 + PP_3791 0.29 -0.4
4,320,322 - PP_3791 0.29 -1.4
4,320,329 + PP_3791 0.30 +1.8
4,320,330 - PP_3791 0.31 +2.6
4,320,330 - PP_3791 0.31 -1.3
4,320,362 - PP_3791 0.36 +0.0
4,320,441 + PP_3791 0.48 -0.1
4,320,442 - PP_3791 0.48 -1.8
4,320,453 + PP_3791 0.50 -1.2
4,320,453 + PP_3791 0.50 +1.4
4,320,476 + PP_3791 0.54 -0.8
4,320,477 - PP_3791 0.54 +1.1
4,320,490 - PP_3791 0.56 +0.2
4,320,591 + PP_3791 0.72 -3.4
4,320,591 + PP_3791 0.72 +0.9
4,320,591 + PP_3791 0.72 +1.9
4,320,630 + PP_3791 0.78 +0.3
4,320,664 - PP_3791 0.84 +0.6
4,320,680 + PP_3791 0.86 -2.8
4,320,681 - PP_3791 0.87 -1.4
4,320,785 + +0.6

Or see this region's nucleotide sequence