Strain Fitness in Pseudomonas putida KT2440 around PP_2287

Experiment: carbon source 2-Deoxy-D-glucose 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source 2-Deoxy-D-glucose 10 mM
2,610,075	+		PP_2286	0.55	+0.3
2,610,075	+		PP_2286	0.55	-0.9
2,610,075	+		PP_2286	0.55	-1.6
2,610,075	+		PP_2286	0.55	-2.6
2,610,075	+		PP_2286	0.55	+0.5
2,610,075	+		PP_2286	0.55	-1.0
2,610,076	-		PP_2286	0.56	-1.8
2,610,132	+		PP_2286	0.58	+1.0
2,610,133	-		PP_2286	0.58	+0.7
2,610,242	+		PP_2286	0.63	-0.4
2,610,303	+		PP_2286	0.66	-1.0
2,610,330	+		PP_2286	0.67	+0.5
2,610,409	-		PP_2286	0.71	-0.5
2,610,467	-		PP_2286	0.73	-1.4
2,610,467	-		PP_2286	0.73	-1.1
2,610,506	-		PP_2286	0.75	+2.3
2,610,658	-				+0.5
2,610,702	+		PP_2286	0.84	-0.6
2,610,702	+		PP_2286	0.84	-1.4
2,610,703	-		PP_2286	0.84	-0.2
2,610,703	-		PP_2286	0.84	+0.5
2,610,710	+		PP_2286	0.84	-2.0
2,610,710	+		PP_2286	0.84	+0.5
2,610,821	+		PP_2286	0.90	-1.8
2,610,822	-		PP_2286	0.90	+1.0
2,610,852	+				-1.2
2,610,853	-				+0.5
2,610,853	-				+1.3
2,610,909	+				-1.1
2,610,948	+				-0.5
2,610,949	-				+0.5
2,610,949	-				+0.1
2,610,983	+				-0.5
2,610,984	-				+0.7
2,611,025	+				-0.6
2,611,026	-				+0.6
2,611,026	-				+0.5
2,611,038	+				-2.0
2,611,047	+				+0.1
2,611,060	+				+1.4
2,611,061	-				-1.5
2,611,120	-				+1.1
2,611,120	-				+0.6
2,611,242	+				+0.3
2,611,243	-				-0.1
2,611,243	-				-0.2
2,611,266	+				-1.3
2,611,266	+				-0.0
2,611,267	-				-0.1
2,611,296	+				-0.8
2,611,296	+				+0.5
2,611,296	+				-0.3
2,611,317	-				-0.6
2,611,320	+				+0.7
2,611,321	-				+0.1
2,611,337	+				-0.5
2,611,354	-				-1.1
2,611,419	+				+0.5
2,611,420	-				-0.2
2,611,603	+		PP_2287	0.11	+0.5
2,611,603	+		PP_2287	0.11	-0.8
2,611,731	+		PP_2287	0.14	+0.4
2,611,732	-		PP_2287	0.14	-0.3
2,611,732	-		PP_2287	0.14	-0.1
2,611,765	-		PP_2287	0.15	-1.8
2,611,765	-		PP_2287	0.15	-1.2
2,611,814	+		PP_2287	0.16	-0.2
2,612,041	-		PP_2287	0.21	-0.9
2,612,070	+		PP_2287	0.21	-0.8
2,612,070	+		PP_2287	0.21	-0.5
2,612,070	+				-1.5
2,612,071	-		PP_2287	0.21	-2.0
2,612,071	-		PP_2287	0.21	-0.4
2,612,129	-		PP_2287	0.23	-0.3
2,612,129	-		PP_2287	0.23	+0.0
2,612,211	-		PP_2287	0.24	+0.0
2,612,319	-		PP_2287	0.27	+1.0
2,612,319	-		PP_2287	0.27	+0.3
2,612,319	-		PP_2287	0.27	-1.0
2,612,319	-		PP_2287	0.27	-3.7
2,612,472	-		PP_2287	0.30	-3.3
2,612,596	-		PP_2287	0.33	+1.3
2,612,607	+		PP_2287	0.33	+1.1
2,612,736	-		PP_2287	0.36	+0.1
2,612,815	-		PP_2287	0.37	+0.4
2,612,901	+		PP_2287	0.39	+0.4
2,612,997	-		PP_2287	0.41	+2.9
2,612,997	-		PP_2287	0.41	-0.6
2,613,090	+		PP_2287	0.43	-1.0
2,613,090	+		PP_2287	0.43	+0.3
2,613,101	+		PP_2287	0.43	-1.6
2,613,101	+		PP_2287	0.43	-1.3
2,613,101	+		PP_2287	0.43	-0.6
2,613,102	-		PP_2287	0.43	-1.0
2,613,102	-		PP_2287	0.43	-0.1
2,613,142	+		PP_2287	0.44	-0.0
2,613,260	+		PP_2287	0.47	-0.9
2,613,456	+		PP_2287	0.51	+0.3
2,613,456	+		PP_2287	0.51	-0.5
2,613,456	+		PP_2287	0.51	+0.5
2,613,457	-		PP_2287	0.51	-0.6
2,613,584	+		PP_2287	0.54	+2.7
2,613,584	+		PP_2287	0.54	-0.7
2,613,585	-		PP_2287	0.54	-0.6
2,613,676	+		PP_2287	0.55	+0.5
2,613,677	-		PP_2287	0.56	-2.1
2,613,677	-		PP_2287	0.56	+1.2
2,613,677	-		PP_2287	0.56	-0.9
2,613,677	-		PP_2287	0.56	-0.7
2,613,677	-		PP_2287	0.56	+2.1
2,613,726	+		PP_2287	0.57	-0.2
2,613,727	-		PP_2287	0.57	-1.2
2,613,809	+		PP_2287	0.58	-0.5
2,613,846	+		PP_2287	0.59	+0.5
2,613,937	-		PP_2287	0.61	+0.1
2,613,937	-		PP_2287	0.61	+0.8
2,614,142	+		PP_2287	0.65	+2.3
2,614,142	+				-0.8
2,614,142	+		PP_2287	0.65	-0.6
2,614,238	+		PP_2287	0.67	-0.5
2,614,239	-		PP_2287	0.67	+0.1
2,614,239	-		PP_2287	0.67	-1.0
2,614,300	+		PP_2287	0.69	-2.0
2,614,301	-		PP_2287	0.69	-1.1
2,614,311	+		PP_2287	0.69	+0.1
2,614,322	+		PP_2287	0.69	-0.5
2,614,362	+		PP_2287	0.70	-0.8
2,614,362	+		PP_2287	0.70	+0.5
2,614,362	+		PP_2287	0.70	-0.9
2,614,451	+		PP_2287	0.72	-1.4
2,614,601	-		PP_2287	0.75	+1.5
2,614,749	+		PP_2287	0.78	+0.5
2,614,750	-		PP_2287	0.78	-1.6
2,615,052	+		PP_2287	0.85	-1.8
2,615,052	+		PP_2287	0.85	-0.0
2,615,052	+		PP_2287	0.85	-0.6
2,615,053	-		PP_2287	0.85	-2.1
2,615,053	-		PP_2287	0.85	+1.3
2,615,053	-		PP_2287	0.85	+0.2
2,615,133	+		PP_2287	0.86	-1.5
2,615,134	-		PP_2287	0.86	+0.2
2,615,134	-		PP_2287	0.86	-0.6
2,615,134	-		PP_2287	0.86	-0.5
2,615,134	-		PP_2287	0.86	+1.1
2,615,134	-		PP_2287	0.86	+1.0
2,615,195	+		PP_2287	0.88	-0.0
2,615,195	+		PP_2287	0.88	-0.7
2,615,195	+		PP_2287	0.88	-1.0
2,615,196	-		PP_2287	0.88	+0.5
2,615,361	+				+0.5
2,615,361	+				-1.5
2,615,361	+				-0.9
2,615,362	-				+3.4
2,615,362	-				-1.0
2,615,432	+				-0.7
2,615,502	+				+0.8
2,615,503	-				-2.6
2,615,503	-				+1.3
2,615,583	+				+0.4
2,615,583	+				+1.1
2,615,583	+				-0.9
2,615,583	+				-0.3
2,615,584	-				-0.5
2,615,704	+				+0.3
2,615,705	-				-0.1
2,615,715	-				+2.5
2,615,745	+				+1.4
2,615,745	+				+2.1
2,615,785	-				-0.1
2,615,840	+				-1.6
2,615,841	-				+0.4
2,615,849	+				+0.0
2,615,850	-				-0.1
2,615,855	+				-0.6
2,615,855	+				+1.1
2,615,856	-				-0.7
2,615,856	-				-2.0
2,615,979	-				+0.9
2,615,979	-				-0.9
2,616,116	+		PP_2288	0.17	+0.2
2,616,116	+		PP_2288	0.17	+4.2
2,616,116	+		PP_2288	0.17	-0.4
2,616,117	-		PP_2288	0.17	+0.3
2,616,117	-		PP_2288	0.17	+1.5
2,616,143	+		PP_2288	0.19	+1.2
2,616,143	+		PP_2288	0.19	+0.4
2,616,143	+		PP_2288	0.19	+0.1
2,616,144	-		PP_2288	0.19	-0.5
2,616,260	+		PP_2288	0.26	-1.2
2,616,261	-		PP_2288	0.26	+1.0
2,616,659	+		PP_2288	0.50	+0.1
2,616,746	+				+1.1
2,616,746	+		PP_2288	0.56	-1.0
2,616,747	-		PP_2288	0.56	-0.3