Strain Fitness in Agrobacterium fabrum C58 around Atu0912

Experiment: Indole-3-butyric 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0909 and Atu0910 overlap by 4 nucleotidesAtu0910 and Atu0911 overlap by 1 nucleotidesAtu0911 and Atu0912 are separated by 19 nucleotidesAtu0912 and Atu0913 overlap by 4 nucleotidesAtu0913 and Atu0914 overlap by 4 nucleotidesAtu0914 and Atu0915 overlap by 4 nucleotides Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289 Atu0909 Atu0910: Atu0910 - Na+/H+ antiporter, at 901,286 to 901,705 Atu0910 Atu0911: Atu0911 - Na+/H+ antiporter, at 901,705 to 902,082 Atu0911 Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679 Atu0912 Atu0913: Atu0913 - Na+/H+ antiporter, at 903,676 to 904,155 Atu0913 Atu0914: Atu0914 - Na+/H+ antiporter, at 904,152 to 904,538 Atu0914 Atu0915: Atu0915 - Na+/H+ antiporter, at 904,535 to 904,867 Atu0915 Position (kb) 902 903 904Strain fitness (log2 ratio) -2 -1 0 1at 902.039 kb on + strand, within Atu0911at 902.978 kb on + strand, within Atu0912at 902.983 kb on + strand, within Atu0912at 903.620 kb on + strandat 903.637 kb on + strandat 903.639 kb on + strandat 903.639 kb on + strandat 903.645 kb on - strandat 903.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM
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902,039 + Atu0911 0.88 -2.2
902,978 + Atu0912 0.56 -2.1
902,983 + Atu0912 0.56 -0.9
903,620 + -0.2
903,637 + -0.4
903,639 + -2.0
903,639 + -0.3
903,645 - -1.9
903,674 - -1.2

Or see this region's nucleotide sequence