Strain Fitness in Agrobacterium fabrum C58 around Atu0558

Experiment: Indole-3-butyric 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0557 and Atu0558 are separated by 11 nucleotidesAtu0558 and Atu0559 are separated by 1 nucleotidesAtu0559 and Atu0560 are separated by 330 nucleotides Atu0557: Atu0557 - flagellum-specific ATP synthase, at 542,613 to 544,034 Atu0557 Atu0558: Atu0558 - flagellar basal body rod protein, at 544,046 to 544,780 Atu0558 Atu0559: Atu0559 - hypothetical protein, at 544,782 to 545,417 Atu0559 Atu0560: Atu0560 - flagellar motor protein, at 545,748 to 546,620 Atu0560 Position (kb) 544 545Strain fitness (log2 ratio) -2 -1 0 1 2at 543.047 kb on - strand, within Atu0557at 543.083 kb on + strand, within Atu0557at 543.091 kb on - strand, within Atu0557at 543.091 kb on - strand, within Atu0557at 543.091 kb on - strand, within Atu0557at 543.091 kb on - strand, within Atu0557at 543.105 kb on + strand, within Atu0557at 543.130 kb on + strand, within Atu0557at 543.138 kb on - strand, within Atu0557at 543.288 kb on - strand, within Atu0557at 543.288 kb on - strand, within Atu0557at 543.298 kb on - strand, within Atu0557at 543.464 kb on + strand, within Atu0557at 543.472 kb on - strand, within Atu0557at 543.494 kb on + strand, within Atu0557at 543.535 kb on + strand, within Atu0557at 543.558 kb on - strand, within Atu0557at 543.673 kb on + strand, within Atu0557at 543.673 kb on + strand, within Atu0557at 543.714 kb on - strand, within Atu0557at 543.752 kb on + strand, within Atu0557at 543.755 kb on - strand, within Atu0557at 543.803 kb on + strand, within Atu0557at 543.803 kb on + strand, within Atu0557at 543.926 kb on + strandat 543.945 kb on - strandat 544.145 kb on - strand, within Atu0558at 544.181 kb on - strand, within Atu0558at 544.188 kb on + strand, within Atu0558at 544.191 kb on - strand, within Atu0558at 544.193 kb on + strand, within Atu0558at 544.196 kb on - strand, within Atu0558at 544.201 kb on - strand, within Atu0558at 544.201 kb on - strand, within Atu0558at 544.206 kb on - strand, within Atu0558at 544.296 kb on + strand, within Atu0558at 544.304 kb on + strand, within Atu0558at 544.381 kb on + strand, within Atu0558at 544.484 kb on + strand, within Atu0558at 544.558 kb on + strand, within Atu0558at 544.568 kb on + strand, within Atu0558at 544.568 kb on + strand, within Atu0558at 544.576 kb on - strand, within Atu0558at 544.697 kb on - strand, within Atu0558at 544.754 kb on - strandat 544.777 kb on + strandat 544.823 kb on + strandat 544.832 kb on - strandat 544.890 kb on + strand, within Atu0559at 544.982 kb on - strand, within Atu0559at 545.038 kb on - strand, within Atu0559at 545.145 kb on - strand, within Atu0559at 545.182 kb on - strand, within Atu0559at 545.232 kb on + strand, within Atu0559at 545.289 kb on - strand, within Atu0559at 545.324 kb on - strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.333 kb on - strand, within Atu0559at 545.348 kb on + strand, within Atu0559at 545.358 kb on + strandat 545.366 kb on + strandat 545.366 kb on - strandat 545.367 kb on - strandat 545.374 kb on - strandat 545.381 kb on - strandat 545.410 kb on - strandat 545.470 kb on - strandat 545.497 kb on - strandat 545.515 kb on + strandat 545.542 kb on - strandat 545.555 kb on + strandat 545.653 kb on + strandat 545.653 kb on + strandat 545.653 kb on + strandat 545.665 kb on + strandat 545.672 kb on + strandat 545.727 kb on - strandat 545.727 kb on - strandat 545.729 kb on + strandat 545.729 kb on + strandat 545.735 kb on - strandat 545.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM
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543,047 - Atu0557 0.31 -0.2
543,083 + Atu0557 0.33 +0.6
543,091 - Atu0557 0.34 +0.2
543,091 - Atu0557 0.34 +0.4
543,091 - Atu0557 0.34 +0.8
543,091 - Atu0557 0.34 +0.1
543,105 + Atu0557 0.35 +0.1
543,130 + Atu0557 0.36 -1.2
543,138 - Atu0557 0.37 +0.7
543,288 - Atu0557 0.47 +0.4
543,288 - Atu0557 0.47 +0.1
543,298 - Atu0557 0.48 -0.1
543,464 + Atu0557 0.60 +0.6
543,472 - Atu0557 0.60 +0.3
543,494 + Atu0557 0.62 -1.8
543,535 + Atu0557 0.65 +1.3
543,558 - Atu0557 0.66 +0.2
543,673 + Atu0557 0.75 -2.4
543,673 + Atu0557 0.75 +0.0
543,714 - Atu0557 0.77 -0.9
543,752 + Atu0557 0.80 +0.4
543,755 - Atu0557 0.80 +0.1
543,803 + Atu0557 0.84 -0.2
543,803 + Atu0557 0.84 -0.1
543,926 + -0.0
543,945 - -0.1
544,145 - Atu0558 0.13 -0.1
544,181 - Atu0558 0.18 -0.1
544,188 + Atu0558 0.19 +0.3
544,191 - Atu0558 0.20 +0.1
544,193 + Atu0558 0.20 -0.2
544,196 - Atu0558 0.20 +1.5
544,201 - Atu0558 0.21 -0.0
544,201 - Atu0558 0.21 -0.1
544,206 - Atu0558 0.22 +0.0
544,296 + Atu0558 0.34 +0.2
544,304 + Atu0558 0.35 -0.0
544,381 + Atu0558 0.46 -0.5
544,484 + Atu0558 0.60 +0.1
544,558 + Atu0558 0.70 -0.3
544,568 + Atu0558 0.71 +0.2
544,568 + Atu0558 0.71 -0.0
544,576 - Atu0558 0.72 -0.2
544,697 - Atu0558 0.89 +0.4
544,754 - -0.1
544,777 + +0.0
544,823 + +0.4
544,832 - -0.8
544,890 + Atu0559 0.17 +0.7
544,982 - Atu0559 0.31 +0.2
545,038 - Atu0559 0.40 -0.4
545,145 - Atu0559 0.57 +1.3
545,182 - Atu0559 0.63 +0.7
545,232 + Atu0559 0.71 +0.1
545,289 - Atu0559 0.80 -0.2
545,324 - Atu0559 0.85 -0.2
545,325 + Atu0559 0.85 +0.0
545,325 + Atu0559 0.85 -0.2
545,325 + Atu0559 0.85 -0.3
545,333 - Atu0559 0.87 +0.1
545,348 + Atu0559 0.89 +0.5
545,358 + -0.0
545,366 + -0.3
545,366 - +0.8
545,367 - +0.1
545,374 - -0.4
545,381 - -0.9
545,410 - +0.7
545,470 - +1.1
545,497 - +0.3
545,515 + -0.3
545,542 - +0.1
545,555 + -0.0
545,653 + +0.1
545,653 + +0.6
545,653 + +0.5
545,665 + +0.5
545,672 + -0.2
545,727 - +0.6
545,727 - -0.3
545,729 + +0.1
545,729 + -0.0
545,735 - +1.8
545,774 - +1.2

Or see this region's nucleotide sequence