Strain Fitness in Agrobacterium fabrum C58 around Atu0129

Experiment: Indole-3-butyric 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0128 and Atu0129 are separated by 6 nucleotidesAtu0129 and Atu0130 are separated by 4 nucleotidesAtu0130 and Atu0131 overlap by 1 nucleotides Atu0128: Atu0128 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 132,566 to 133,669 Atu0128 Atu0129: Atu0129 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 133,676 to 134,647 Atu0129 Atu0130: Atu0130 - cytidine deaminase, at 134,652 to 135,056 Atu0130 Atu0131: Atu0131 - purine nucleoside phosphorylase, at 135,056 to 135,856 Atu0131 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.751 kb on + strand, within Atu0128at 132.751 kb on + strand, within Atu0128at 132.773 kb on - strand, within Atu0128at 132.799 kb on + strand, within Atu0128at 132.807 kb on - strand, within Atu0128at 132.814 kb on + strand, within Atu0128at 132.822 kb on - strand, within Atu0128at 132.825 kb on + strand, within Atu0128at 132.886 kb on - strand, within Atu0128at 132.908 kb on - strand, within Atu0128at 132.986 kb on + strand, within Atu0128at 133.148 kb on - strand, within Atu0128at 133.215 kb on - strand, within Atu0128at 133.224 kb on + strand, within Atu0128at 133.229 kb on + strand, within Atu0128at 133.262 kb on - strand, within Atu0128at 133.271 kb on + strand, within Atu0128at 133.277 kb on - strand, within Atu0128at 133.283 kb on - strand, within Atu0128at 133.474 kb on + strand, within Atu0128at 133.524 kb on + strand, within Atu0128at 133.532 kb on - strand, within Atu0128at 133.595 kb on - strandat 133.671 kb on - strandat 133.741 kb on - strandat 133.881 kb on + strand, within Atu0129at 133.889 kb on - strand, within Atu0129at 133.917 kb on + strand, within Atu0129at 133.990 kb on + strand, within Atu0129at 134.008 kb on + strand, within Atu0129at 134.008 kb on + strand, within Atu0129at 134.013 kb on + strand, within Atu0129at 134.021 kb on - strand, within Atu0129at 134.021 kb on - strand, within Atu0129at 134.023 kb on + strand, within Atu0129at 134.023 kb on + strand, within Atu0129at 134.150 kb on + strand, within Atu0129at 134.150 kb on + strand, within Atu0129at 134.158 kb on - strand, within Atu0129at 134.185 kb on + strand, within Atu0129at 134.195 kb on + strand, within Atu0129at 134.195 kb on + strand, within Atu0129at 134.203 kb on - strand, within Atu0129at 134.253 kb on - strand, within Atu0129at 134.392 kb on + strand, within Atu0129at 134.392 kb on + strand, within Atu0129at 134.392 kb on + strand, within Atu0129at 134.392 kb on + strand, within Atu0129at 134.402 kb on - strand, within Atu0129at 134.416 kb on + strand, within Atu0129at 134.500 kb on + strand, within Atu0129at 134.561 kb on + strandat 134.561 kb on + strandat 134.569 kb on - strandat 134.569 kb on - strandat 134.569 kb on - strandat 134.616 kb on - strandat 134.671 kb on + strandat 134.808 kb on + strand, within Atu0130at 134.808 kb on + strand, within Atu0130at 134.808 kb on + strand, within Atu0130at 134.860 kb on - strand, within Atu0130at 135.035 kb on + strandat 135.048 kb on - strandat 135.063 kb on - strandat 135.099 kb on + strandat 135.107 kb on - strandat 135.107 kb on - strandat 135.130 kb on - strandat 135.130 kb on - strandat 135.183 kb on + strand, within Atu0131at 135.238 kb on + strand, within Atu0131at 135.266 kb on + strand, within Atu0131at 135.363 kb on + strand, within Atu0131at 135.521 kb on + strand, within Atu0131

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM
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132,751 + Atu0128 0.17 +0.1
132,751 + Atu0128 0.17 -0.2
132,773 - Atu0128 0.19 -0.5
132,799 + Atu0128 0.21 +0.1
132,807 - Atu0128 0.22 +0.0
132,814 + Atu0128 0.22 -0.3
132,822 - Atu0128 0.23 -0.4
132,825 + Atu0128 0.23 +0.6
132,886 - Atu0128 0.29 -0.0
132,908 - Atu0128 0.31 +0.1
132,986 + Atu0128 0.38 -0.0
133,148 - Atu0128 0.53 +0.2
133,215 - Atu0128 0.59 -0.4
133,224 + Atu0128 0.60 -0.1
133,229 + Atu0128 0.60 -0.2
133,262 - Atu0128 0.63 -0.2
133,271 + Atu0128 0.64 +0.8
133,277 - Atu0128 0.64 +0.6
133,283 - Atu0128 0.65 -0.8
133,474 + Atu0128 0.82 -2.2
133,524 + Atu0128 0.87 +1.3
133,532 - Atu0128 0.88 -0.1
133,595 - +0.3
133,671 - -0.2
133,741 - -0.0
133,881 + Atu0129 0.21 -0.9
133,889 - Atu0129 0.22 +0.4
133,917 + Atu0129 0.25 +0.0
133,990 + Atu0129 0.32 -0.3
134,008 + Atu0129 0.34 +0.0
134,008 + Atu0129 0.34 -0.9
134,013 + Atu0129 0.35 +1.0
134,021 - Atu0129 0.35 -0.1
134,021 - Atu0129 0.35 -0.1
134,023 + Atu0129 0.36 -0.6
134,023 + Atu0129 0.36 -0.2
134,150 + Atu0129 0.49 -0.0
134,150 + Atu0129 0.49 +0.7
134,158 - Atu0129 0.50 -1.1
134,185 + Atu0129 0.52 -0.3
134,195 + Atu0129 0.53 -0.2
134,195 + Atu0129 0.53 -0.1
134,203 - Atu0129 0.54 -0.7
134,253 - Atu0129 0.59 -0.2
134,392 + Atu0129 0.74 +1.0
134,392 + Atu0129 0.74 -0.4
134,392 + Atu0129 0.74 -0.5
134,392 + Atu0129 0.74 -0.6
134,402 - Atu0129 0.75 -0.4
134,416 + Atu0129 0.76 -0.3
134,500 + Atu0129 0.85 -0.6
134,561 + +0.2
134,561 + +0.1
134,569 - -0.7
134,569 - +0.0
134,569 - -0.2
134,616 - -0.5
134,671 + +0.9
134,808 + Atu0130 0.39 -0.0
134,808 + Atu0130 0.39 +0.3
134,808 + Atu0130 0.39 +0.5
134,860 - Atu0130 0.51 +0.6
135,035 + +0.2
135,048 - +1.1
135,063 - +1.4
135,099 + -0.5
135,107 - -0.1
135,107 - -0.7
135,130 - +0.6
135,130 - -0.2
135,183 + Atu0131 0.16 +0.3
135,238 + Atu0131 0.23 +0.1
135,266 + Atu0131 0.26 +0.5
135,363 + Atu0131 0.38 -0.0
135,521 + Atu0131 0.58 +1.2

Or see this region's nucleotide sequence