Strain Fitness in Pseudomonas putida KT2440 around PP_5616

Experiment: carbon source 3-O-methyl-glucose 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5614 and PP_5615 are separated by 149 nucleotidesPP_5615 and PP_5616 are separated by 188 nucleotidesPP_5616 and PP_5617 are separated by 11 nucleotidesPP_5617 and PP_3688 are separated by 192 nucleotides PP_5614: PP_5614 - protein of unknown function, at 4,193,043 to 4,193,498 _5614 PP_5615: PP_5615 - conserved protein of unknown function, at 4,193,648 to 4,193,959 _5615 PP_5616: PP_5616 - conserved protein of unknown function, at 4,194,148 to 4,194,552 _5616 PP_5617: PP_5617 - conserved protein of unknown function, at 4,194,564 to 4,194,782 _5617 PP_3688: PP_3688 - conserved protein of unknown function, at 4,194,975 to 4,195,673 _3688 Position (kb) 4194 4195Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4193.152 kb on + strand, within PP_5614at 4193.153 kb on - strand, within PP_5614at 4193.159 kb on + strand, within PP_5614at 4193.223 kb on + strand, within PP_5614at 4193.224 kb on - strand, within PP_5614at 4193.224 kb on - strand, within PP_5614at 4193.224 kb on - strand, within PP_5614at 4193.274 kb on - strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.336 kb on + strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.337 kb on - strand, within PP_5614at 4193.343 kb on + strand, within PP_5614at 4193.344 kb on - strand, within PP_5614at 4193.344 kb on - strand, within PP_5614at 4193.344 kb on - strandat 4193.503 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.515 kb on + strandat 4193.516 kb on - strandat 4193.516 kb on - strandat 4193.516 kb on - strandat 4193.516 kb on - strandat 4193.516 kb on - strandat 4193.516 kb on - strandat 4193.517 kb on + strandat 4193.539 kb on + strandat 4193.539 kb on + strandat 4193.540 kb on - strandat 4193.606 kb on + strandat 4193.606 kb on + strandat 4193.607 kb on - strandat 4193.636 kb on + strandat 4193.637 kb on - strandat 4193.637 kb on - strandat 4193.685 kb on + strandat 4193.685 kb on + strand, within PP_5615at 4193.685 kb on + strand, within PP_5615at 4193.686 kb on - strand, within PP_5615at 4193.686 kb on - strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.704 kb on - strand, within PP_5615at 4193.754 kb on + strand, within PP_5615at 4193.755 kb on - strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.844 kb on - strand, within PP_5615at 4193.905 kb on + strand, within PP_5615at 4193.933 kb on + strandat 4193.934 kb on - strandat 4193.934 kb on - strandat 4193.958 kb on - strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.055 kb on - strandat 4194.055 kb on - strandat 4194.115 kb on + strandat 4194.139 kb on + strandat 4194.150 kb on - strandat 4194.150 kb on - strandat 4194.242 kb on + strand, within PP_5616at 4194.256 kb on + strand, within PP_5616at 4194.257 kb on - strand, within PP_5616at 4194.310 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.332 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.500 kb on - strand, within PP_5616at 4194.566 kb on - strandat 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.851 kb on - strandat 4194.909 kb on - strandat 4194.909 kb on - strandat 4194.918 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.923 kb on - strandat 4195.006 kb on - strandat 4195.056 kb on + strand, within PP_3688at 4195.056 kb on + strand, within PP_3688at 4195.057 kb on - strand, within PP_3688at 4195.258 kb on + strand, within PP_3688at 4195.439 kb on + strand, within PP_3688at 4195.452 kb on - strand, within PP_3688at 4195.481 kb on + strand, within PP_3688at 4195.487 kb on - strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.535 kb on - strand, within PP_3688

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source 3-O-methyl-glucose 50 mM
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4,193,152 + PP_5614 0.24 +0.3
4,193,153 - PP_5614 0.24 -2.3
4,193,159 + PP_5614 0.25 -0.5
4,193,223 + PP_5614 0.39 -1.2
4,193,224 - PP_5614 0.40 +4.0
4,193,224 - PP_5614 0.40 +0.9
4,193,224 - PP_5614 0.40 +0.9
4,193,274 - PP_5614 0.51 -1.1
4,193,336 + PP_5614 0.64 -2.6
4,193,336 + PP_5614 0.64 -0.4
4,193,336 + PP_5614 0.64 -0.6
4,193,336 + PP_5614 0.64 +0.5
4,193,336 + PP_5614 0.64 -1.5
4,193,336 + PP_5614 0.64 +0.4
4,193,336 + PP_5614 0.64 +2.5
4,193,336 + PP_5614 0.64 +0.5
4,193,336 + PP_5614 0.64 -1.7
4,193,336 + PP_5614 0.64 +2.5
4,193,336 + PP_5614 0.64 -1.6
4,193,336 + PP_5614 0.64 -0.9
4,193,337 - PP_5614 0.64 -2.9
4,193,337 - PP_5614 0.64 -3.8
4,193,337 - PP_5614 0.64 -1.0
4,193,337 - PP_5614 0.64 -3.0
4,193,337 - PP_5614 0.64 -0.6
4,193,337 - PP_5614 0.64 +1.7
4,193,337 - PP_5614 0.64 -3.0
4,193,337 - PP_5614 0.64 +4.2
4,193,337 - PP_5614 0.64 -0.5
4,193,337 - PP_5614 0.64 -0.6
4,193,337 - PP_5614 0.64 -0.4
4,193,337 - PP_5614 0.64 +0.5
4,193,343 + PP_5614 0.66 -0.7
4,193,344 - PP_5614 0.66 -1.4
4,193,344 - PP_5614 0.66 +0.2
4,193,344 - +0.9
4,193,503 + -0.3
4,193,515 + +0.9
4,193,515 + +0.5
4,193,515 + -1.7
4,193,515 + +2.5
4,193,515 + +0.5
4,193,515 + -0.2
4,193,515 + -0.5
4,193,515 + -0.2
4,193,515 + +0.2
4,193,515 + +1.9
4,193,516 - +0.6
4,193,516 - +1.6
4,193,516 - +0.1
4,193,516 - +1.0
4,193,516 - +1.6
4,193,516 - +0.3
4,193,517 + -0.7
4,193,539 + +0.9
4,193,539 + +1.4
4,193,540 - -2.7
4,193,606 + -1.2
4,193,606 + +1.1
4,193,607 - +2.3
4,193,636 + -0.0
4,193,637 - +0.7
4,193,637 - -0.7
4,193,685 + +1.5
4,193,685 + PP_5615 0.12 -0.9
4,193,685 + PP_5615 0.12 +1.4
4,193,686 - PP_5615 0.12 -0.4
4,193,686 - PP_5615 0.12 -0.3
4,193,703 + PP_5615 0.18 -1.2
4,193,703 + PP_5615 0.18 -0.6
4,193,703 + PP_5615 0.18 -1.2
4,193,703 + PP_5615 0.18 +1.3
4,193,703 + PP_5615 0.18 -0.1
4,193,703 + PP_5615 0.18 +0.9
4,193,704 - PP_5615 0.18 +0.9
4,193,754 + PP_5615 0.34 -0.3
4,193,755 - PP_5615 0.34 +2.6
4,193,776 + PP_5615 0.41 -1.0
4,193,776 + PP_5615 0.41 -2.4
4,193,776 + PP_5615 0.41 -0.5
4,193,776 + PP_5615 0.41 -0.5
4,193,777 - PP_5615 0.41 -0.6
4,193,777 - PP_5615 0.41 +0.2
4,193,777 - PP_5615 0.41 +0.1
4,193,777 - PP_5615 0.41 +1.0
4,193,777 - PP_5615 0.41 +0.3
4,193,844 - PP_5615 0.63 -1.9
4,193,905 + PP_5615 0.82 -0.1
4,193,933 + +0.3
4,193,934 - -0.7
4,193,934 - +0.3
4,193,958 - +0.7
4,194,054 + -0.9
4,194,054 + -0.2
4,194,054 + -0.9
4,194,054 + -2.4
4,194,055 - -0.1
4,194,055 - -2.3
4,194,115 + -0.0
4,194,139 + +1.5
4,194,150 - -1.8
4,194,150 - -0.6
4,194,242 + PP_5616 0.23 +0.3
4,194,256 + PP_5616 0.27 -0.1
4,194,257 - PP_5616 0.27 +0.9
4,194,310 + PP_5616 0.40 -0.2
4,194,312 + PP_5616 0.40 +1.9
4,194,312 + PP_5616 0.40 +0.5
4,194,312 + PP_5616 0.40 -1.1
4,194,313 - PP_5616 0.41 -0.9
4,194,313 - PP_5616 0.41 -0.9
4,194,313 - PP_5616 0.41 -0.5
4,194,332 + PP_5616 0.45 -1.2
4,194,457 + PP_5616 0.76 -3.0
4,194,457 + PP_5616 0.76 -0.3
4,194,457 + PP_5616 0.76 -1.2
4,194,457 + PP_5616 0.76 +1.0
4,194,457 + PP_5616 0.76 -0.9
4,194,499 + PP_5616 0.87 -2.8
4,194,499 + PP_5616 0.87 -5.1
4,194,499 + PP_5616 0.87 -1.3
4,194,500 - PP_5616 0.87 +0.2
4,194,566 - -0.9
4,194,754 + PP_5617 0.87 +0.5
4,194,754 + PP_5617 0.87 -1.1
4,194,754 + PP_5617 0.87 -1.2
4,194,754 + PP_5617 0.87 +0.7
4,194,754 + PP_5617 0.87 +0.8
4,194,851 - +0.4
4,194,909 - -4.2
4,194,909 - -1.0
4,194,918 + +0.2
4,194,922 + +0.2
4,194,922 + -1.4
4,194,922 + +1.0
4,194,922 + +0.2
4,194,922 + +2.5
4,194,923 - -0.5
4,195,006 - +1.1
4,195,056 + PP_3688 0.12 -0.1
4,195,056 + PP_3688 0.12 -1.4
4,195,057 - PP_3688 0.12 -0.1
4,195,258 + PP_3688 0.40 +0.6
4,195,439 + PP_3688 0.66 -0.4
4,195,452 - PP_3688 0.68 +0.6
4,195,481 + PP_3688 0.72 +2.0
4,195,487 - PP_3688 0.73 -1.3
4,195,532 + PP_3688 0.80 -0.1
4,195,532 + PP_3688 0.80 +0.1
4,195,532 + PP_3688 0.80 -1.1
4,195,533 - PP_3688 0.80 -0.3
4,195,533 - PP_3688 0.80 -0.9
4,195,533 - PP_3688 0.80 -1.1
4,195,533 - PP_3688 0.80 +0.7
4,195,533 - PP_3688 0.80 -0.6
4,195,535 - PP_3688 0.80 -3.2

Or see this region's nucleotide sequence