Experiment: carbon source 3-O-methyl-glucose 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5097 and PP_5098 overlap by 11 nucleotides PP_5098 and PP_5099 are separated by 22 nucleotides PP_5099 and PP_5100 overlap by 4 nucleotides PP_5100 and PP_5101 overlap by 4 nucleotides
PP_5097: PP_5097 - homoserine O-acetyltransferase, at 5,820,251 to 5,821,390
_5097
PP_5098: PP_5098 - methionine biosynthesis protein MetW, at 5,821,380 to 5,822,018
_5098
PP_5099: PP_5099 - conserved protein of unknown function, at 5,822,041 to 5,822,475
_5099
PP_5100: PP_5100 - dITP/XTP pyrophosphatase, at 5,822,472 to 5,823,068
_5100
PP_5101: PP_5101 - coproporphyrinogen/heterocyclic compound oxidase (aerobic), at 5,823,065 to 5,824,240
_5101
Position (kb) 5822
5823 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5821.049 kb on + strand, within PP_5097 at 5821.049 kb on + strand, within PP_5097 at 5821.049 kb on + strand, within PP_5097 at 5821.100 kb on + strand, within PP_5097 at 5821.100 kb on + strand, within PP_5097 at 5821.101 kb on - strand, within PP_5097 at 5821.127 kb on + strand, within PP_5097 at 5821.127 kb on + strand, within PP_5097 at 5821.193 kb on + strand, within PP_5097 at 5821.194 kb on - strand, within PP_5097 at 5821.290 kb on - strand at 5821.346 kb on + strand at 5821.347 kb on - strand at 5821.347 kb on - strand at 5821.347 kb on - strand at 5821.367 kb on + strand at 5821.367 kb on + strand at 5821.367 kb on + strand at 5821.367 kb on + strand at 5821.368 kb on - strand at 5821.368 kb on - strand at 5821.451 kb on - strand, within PP_5098 at 5821.545 kb on - strand, within PP_5098 at 5821.545 kb on - strand, within PP_5098 at 5821.669 kb on - strand, within PP_5098 at 5821.758 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.804 kb on - strand, within PP_5098 at 5821.804 kb on - strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.806 kb on - strand, within PP_5098 at 5821.812 kb on + strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.946 kb on + strand, within PP_5098 at 5821.947 kb on - strand, within PP_5098 at 5821.955 kb on - strand at 5821.955 kb on - strand at 5821.955 kb on - strand at 5821.971 kb on + strand at 5821.972 kb on - strand at 5822.130 kb on - strand, within PP_5099 at 5822.152 kb on + strand, within PP_5099 at 5822.356 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.494 kb on + strand at 5822.728 kb on - strand, within PP_5100 at 5822.728 kb on - strand, within PP_5100 at 5822.740 kb on - strand, within PP_5100 at 5822.989 kb on + strand, within PP_5100 at 5822.990 kb on - strand, within PP_5100 at 5823.128 kb on + strand at 5823.129 kb on - strand at 5823.129 kb on - strand at 5823.151 kb on - strand at 5823.215 kb on + strand, within PP_5101 at 5823.261 kb on + strand, within PP_5101 at 5823.261 kb on + strand, within PP_5101 at 5823.340 kb on - strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.352 kb on - strand, within PP_5101 at 5823.352 kb on - strand, within PP_5101 at 5823.361 kb on + strand, within PP_5101 at 5823.361 kb on + strand, within PP_5101 at 5823.362 kb on - strand, within PP_5101 at 5823.362 kb on - strand, within PP_5101
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source 3-O-methyl-glucose 50 mM remove 5,821,049 + PP_5097 0.70 -3.2 5,821,049 + PP_5097 0.70 -3.6 5,821,049 + PP_5097 0.70 -3.6 5,821,100 + PP_5097 0.74 -2.7 5,821,100 + PP_5097 0.74 +0.8 5,821,101 - PP_5097 0.75 -2.6 5,821,127 + PP_5097 0.77 -3.6 5,821,127 + PP_5097 0.77 -3.6 5,821,193 + PP_5097 0.83 -2.9 5,821,194 - PP_5097 0.83 -2.3 5,821,290 - -0.2 5,821,346 + -1.6 5,821,347 - -0.2 5,821,347 - -3.0 5,821,347 - -3.0 5,821,367 + -3.0 5,821,367 + -1.6 5,821,367 + -4.8 5,821,367 + -4.2 5,821,368 - -3.0 5,821,368 - -1.6 5,821,451 - PP_5098 0.11 -3.0 5,821,545 - PP_5098 0.26 -3.1 5,821,545 - PP_5098 0.26 -2.2 5,821,669 - PP_5098 0.45 +0.8 5,821,758 + PP_5098 0.59 -0.2 5,821,803 + PP_5098 0.66 -2.6 5,821,803 + PP_5098 0.66 -2.0 5,821,803 + PP_5098 0.66 -3.0 5,821,803 + PP_5098 0.66 -0.2 5,821,803 + PP_5098 0.66 -4.6 5,821,804 - PP_5098 0.66 -2.3 5,821,804 - PP_5098 0.66 +0.8 5,821,805 + PP_5098 0.67 -3.2 5,821,805 + PP_5098 0.67 -5.0 5,821,805 + PP_5098 0.67 -3.2 5,821,806 - PP_5098 0.67 -4.0 5,821,812 + PP_5098 0.68 -4.0 5,821,813 - PP_5098 0.68 -2.4 5,821,813 - PP_5098 0.68 -3.3 5,821,813 - PP_5098 0.68 -3.2 5,821,946 + PP_5098 0.89 -4.2 5,821,947 - PP_5098 0.89 -2.2 5,821,955 - +0.8 5,821,955 - -2.6 5,821,955 - +0.8 5,821,971 + -1.6 5,821,972 - -1.6 5,822,130 - PP_5099 0.20 +0.3 5,822,152 + PP_5099 0.26 -1.5 5,822,356 + PP_5099 0.72 -0.2 5,822,359 + PP_5099 0.73 -2.9 5,822,359 + PP_5099 0.73 +0.1 5,822,359 + PP_5099 0.73 -1.7 5,822,360 - PP_5099 0.73 -1.3 5,822,360 - PP_5099 0.73 -2.2 5,822,360 - PP_5099 0.73 -1.0 5,822,360 - PP_5099 0.73 -0.7 5,822,360 - PP_5099 0.73 -2.6 5,822,360 - PP_5099 0.73 -0.8 5,822,494 + +0.8 5,822,728 - PP_5100 0.43 +3.2 5,822,728 - PP_5100 0.43 +0.8 5,822,740 - PP_5100 0.45 +0.8 5,822,989 + PP_5100 0.87 -0.1 5,822,990 - PP_5100 0.87 -0.2 5,823,128 + -0.6 5,823,129 - -1.6 5,823,129 - +0.8 5,823,151 - -0.8 5,823,215 + PP_5101 0.13 +0.8 5,823,261 + PP_5101 0.17 +4.3 5,823,261 + PP_5101 0.17 -0.8 5,823,340 - PP_5101 0.23 +0.8 5,823,351 + PP_5101 0.24 +3.1 5,823,351 + PP_5101 0.24 -0.2 5,823,351 + PP_5101 0.24 -0.2 5,823,351 + PP_5101 0.24 -1.2 5,823,352 - PP_5101 0.24 +0.0 5,823,352 - PP_5101 0.24 +0.8 5,823,361 + PP_5101 0.25 +4.1 5,823,361 + PP_5101 0.25 -0.7 5,823,362 - PP_5101 0.25 -1.0 5,823,362 - PP_5101 0.25 +2.2
Or see this region's nucleotide sequence