Strain Fitness in Pseudomonas putida KT2440 around PP_4844

Experiment: carbon source 3-O-methyl-glucose 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4843 and PP_4844 overlap by 4 nucleotidesPP_4844 and PP_4845 are separated by 153 nucleotidesPP_4845 and PP_4846 are separated by 31 nucleotides PP_4843: PP_4843 - putative Urea ABC transporter, permease protein, at 5,511,289 to 5,512,368 _4843 PP_4844: PP_4844 - putative Urea ABC transporter, ATP-binding protein, at 5,512,365 to 5,513,222 _4844 PP_4845: PP_4845 - putative Urea ABC transporter, ATP-binding protein, at 5,513,376 to 5,514,074 _4845 PP_4846: PP_4846 - L-amino acid N-acyltransferase, at 5,514,106 to 5,514,621 _4846 Position (kb) 5512 5513 5514Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5511.433 kb on + strand, within PP_4843at 5511.434 kb on - strand, within PP_4843at 5511.434 kb on - strand, within PP_4843at 5511.466 kb on + strand, within PP_4843at 5511.571 kb on + strand, within PP_4843at 5511.571 kb on + strand, within PP_4843at 5511.571 kb on + strandat 5511.572 kb on - strand, within PP_4843at 5511.647 kb on - strand, within PP_4843at 5511.760 kb on + strand, within PP_4843at 5511.761 kb on - strand, within PP_4843at 5511.946 kb on + strand, within PP_4843at 5511.946 kb on + strand, within PP_4843at 5512.033 kb on + strand, within PP_4843at 5512.034 kb on - strand, within PP_4843at 5512.106 kb on - strand, within PP_4843at 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.560 kb on + strand, within PP_4844at 5512.561 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.668 kb on + strand, within PP_4844at 5512.669 kb on - strand, within PP_4844at 5512.707 kb on + strand, within PP_4844at 5513.208 kb on + strandat 5513.209 kb on - strandat 5513.209 kb on - strandat 5513.277 kb on + strandat 5513.277 kb on + strandat 5513.278 kb on - strandat 5513.278 kb on - strandat 5513.288 kb on + strandat 5513.288 kb on + strandat 5513.289 kb on - strandat 5513.314 kb on - strandat 5513.325 kb on + strandat 5513.403 kb on + strandat 5513.403 kb on + strandat 5513.403 kb on + strandat 5513.404 kb on - strandat 5513.406 kb on + strandat 5513.406 kb on + strandat 5513.407 kb on - strandat 5513.407 kb on - strandat 5513.407 kb on - strandat 5513.613 kb on + strand, within PP_4845at 5513.613 kb on + strand, within PP_4845at 5513.613 kb on + strand, within PP_4845at 5513.725 kb on - strand, within PP_4845at 5513.725 kb on - strand, within PP_4845at 5513.955 kb on + strand, within PP_4845at 5513.956 kb on - strand, within PP_4845at 5514.052 kb on + strandat 5514.052 kb on + strandat 5514.052 kb on + strandat 5514.053 kb on - strandat 5514.053 kb on - strandat 5514.064 kb on + strandat 5514.072 kb on + strandat 5514.073 kb on - strandat 5514.152 kb on + strandat 5514.163 kb on + strand, within PP_4846at 5514.164 kb on - strand, within PP_4846at 5514.164 kb on - strand, within PP_4846at 5514.164 kb on - strand, within PP_4846at 5514.164 kb on - strand, within PP_4846

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source 3-O-methyl-glucose 50 mM
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5,511,433 + PP_4843 0.13 +1.2
5,511,434 - PP_4843 0.13 +3.0
5,511,434 - PP_4843 0.13 +2.3
5,511,466 + PP_4843 0.16 -0.9
5,511,571 + PP_4843 0.26 +1.7
5,511,571 + PP_4843 0.26 +0.7
5,511,571 + +0.7
5,511,572 - PP_4843 0.26 -1.3
5,511,647 - PP_4843 0.33 +2.7
5,511,760 + PP_4843 0.44 -1.5
5,511,761 - PP_4843 0.44 +4.3
5,511,946 + PP_4843 0.61 -0.7
5,511,946 + PP_4843 0.61 -1.2
5,512,033 + PP_4843 0.69 +0.9
5,512,034 - PP_4843 0.69 -2.3
5,512,106 - PP_4843 0.76 -0.3
5,512,318 + +0.3
5,512,318 + +0.7
5,512,318 + +1.1
5,512,318 + -1.5
5,512,560 + PP_4844 0.23 -0.9
5,512,561 - PP_4844 0.23 -3.2
5,512,631 - PP_4844 0.31 +0.0
5,512,631 - PP_4844 0.31 -0.4
5,512,631 - PP_4844 0.31 +1.1
5,512,668 + PP_4844 0.35 -2.1
5,512,669 - PP_4844 0.35 -0.8
5,512,707 + PP_4844 0.40 -2.3
5,513,208 + -2.1
5,513,209 - -0.9
5,513,209 - +0.7
5,513,277 + -0.2
5,513,277 + -0.5
5,513,278 - -0.6
5,513,278 - -0.6
5,513,288 + -0.5
5,513,288 + +0.9
5,513,289 - +0.7
5,513,314 - -0.6
5,513,325 + +0.0
5,513,403 + +0.6
5,513,403 + -4.1
5,513,403 + -0.9
5,513,404 - -0.5
5,513,406 + -3.3
5,513,406 + -0.1
5,513,407 - -2.8
5,513,407 - -2.9
5,513,407 - +0.8
5,513,613 + PP_4845 0.34 -1.1
5,513,613 + PP_4845 0.34 -1.2
5,513,613 + PP_4845 0.34 -0.8
5,513,725 - PP_4845 0.50 +0.8
5,513,725 - PP_4845 0.50 +3.7
5,513,955 + PP_4845 0.83 -1.0
5,513,956 - PP_4845 0.83 -0.4
5,514,052 + -1.1
5,514,052 + +0.3
5,514,052 + -0.6
5,514,053 - -0.2
5,514,053 - +0.7
5,514,064 + -0.3
5,514,072 + -0.7
5,514,073 - +0.4
5,514,152 + +2.9
5,514,163 + PP_4846 0.11 +0.7
5,514,164 - PP_4846 0.11 -1.3
5,514,164 - PP_4846 0.11 -1.5
5,514,164 - PP_4846 0.11 -1.9
5,514,164 - PP_4846 0.11 +1.9

Or see this region's nucleotide sequence