Strain Fitness in Agrobacterium fabrum C58 around Atu8163

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,740,170	+				+1.1
1,740,295	+				+0.7
1,740,333	-		Atu1754	0.11	+0.2
1,740,333	-		Atu1754	0.11	+0.4
1,740,649	-		Atu1754	0.64	+1.0
1,740,819	-				+0.5
1,740,831	-				-0.4
1,740,890	+				-0.3
1,740,895	+				+0.2
1,740,994	-				-0.0
1,741,048	-				-0.2
1,741,211	-		Atu8163	0.27	+0.0
1,741,213	+		Atu8163	0.27	+0.2
1,741,213	+		Atu8163	0.27	+0.5
1,741,226	+		Atu8163	0.29	+0.1
1,741,298	-		Atu8163	0.41	+0.5
1,741,300	-		Atu8163	0.41	+0.1
1,741,303	-		Atu8163	0.42	+0.4
1,741,404	-		Atu8163	0.58	+0.3
1,741,529	-		Atu8163	0.78	+0.1
1,741,622	-				+0.4
1,741,693	+				+0.1
1,741,736	-				-0.6
1,741,879	-				+0.2
1,741,907	+				-0.5
1,741,915	-				-0.1
1,741,963	-		Atu1756	0.23	-0.1
1,741,965	+		Atu1756	0.24	-0.2
1,742,074	-		Atu1756	0.59	+0.1
1,742,120	-		Atu1756	0.74	-0.2
1,742,129	+		Atu1756	0.77	+0.2
1,742,136	+		Atu1756	0.79	+0.3
1,742,272	-				-1.3
1,742,272	-				-0.1
1,742,429	-				+0.6
1,742,623	-		Atu1757	0.39	-0.2