Strain Fitness in Agrobacterium fabrum C58 around Atu8153
Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Indole-3-butyric 5 mM |
---|---|---|---|---|---|
remove | |||||
1,300,537 | - | Atu1308 | 0.27 | -0.6 | |
1,300,539 | - | Atu1308 | 0.27 | +0.0 | |
1,300,709 | - | Atu1308 | 0.45 | +0.4 | |
1,300,732 | - | Atu1308 | 0.47 | -1.2 | |
1,300,745 | - | Atu1308 | 0.49 | -2.0 | |
1,300,814 | - | Atu1308 | 0.56 | -0.7 | |
1,301,005 | + | Atu1308 | 0.76 | -1.3 | |
1,301,288 | - | +0.2 | |||
1,301,318 | + | -0.9 | |||
1,301,326 | - | -0.3 | |||
1,301,328 | - | -0.7 | |||
1,301,328 | - | -1.7 | |||
1,301,346 | - | -0.3 | |||
1,301,358 | - | +0.2 | |||
1,301,446 | - | -0.3 | |||
1,301,447 | + | +0.3 | |||
1,301,447 | + | +0.9 | |||
1,301,455 | - | +0.1 | |||
1,301,474 | + | -0.3 | |||
1,301,497 | + | +0.8 | |||
1,301,498 | + | +0.1 | |||
1,301,535 | - | Atu8153 | 0.18 | -0.1 | |
1,301,556 | + | Atu8153 | 0.23 | -0.2 | |
1,301,614 | - | Atu8153 | 0.36 | -0.7 | |
1,301,614 | - | Atu8153 | 0.36 | +2.4 | |
1,301,624 | + | Atu8153 | 0.38 | +0.8 | |
1,301,723 | + | Atu8153 | 0.61 | +0.7 | |
1,301,732 | - | Atu8153 | 0.63 | +1.0 | |
1,301,770 | - | Atu8153 | 0.72 | +0.8 | |
1,301,797 | - | Atu8153 | 0.78 | -0.1 | |
1,301,891 | - | -0.3 | |||
1,302,200 | + | +0.1 | |||
1,302,212 | + | +0.1 |
Or see this region's nucleotide sequence