Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5425 and Atu5426 are separated by 7 nucleotides Atu5426 and Atu5427 are separated by 1 nucleotides Atu5427 and Atu5428 are separated by 0 nucleotides
Atu5425: Atu5425 - 2-hydroxychromene-2-carboxylate isomerase, at 420,373 to 420,966
Atu5425
Atu5426: Atu5426 - hypothetical protein, at 420,974 to 421,480
Atu5426
Atu5427: Atu5427 - hypothetical protein, at 421,482 to 422,060
Atu5427
Atu5428: Atu5428 - DNA-damage-inducible protein F, at 422,061 to 423,398
Atu5428
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 420.535 kb on + strand, within Atu5425 at 420.549 kb on + strand, within Atu5425 at 420.675 kb on + strand, within Atu5425 at 420.683 kb on - strand, within Atu5425 at 420.686 kb on + strand, within Atu5425 at 420.706 kb on - strand, within Atu5425 at 420.730 kb on - strand, within Atu5425 at 420.743 kb on - strand, within Atu5425 at 420.799 kb on - strand, within Atu5425 at 420.799 kb on - strand, within Atu5425 at 420.816 kb on - strand, within Atu5425 at 420.841 kb on + strand, within Atu5425 at 420.852 kb on + strand, within Atu5425 at 420.919 kb on + strand at 420.922 kb on - strand at 420.927 kb on - strand at 420.986 kb on + strand at 421.025 kb on - strand, within Atu5426 at 421.029 kb on + strand, within Atu5426 at 421.074 kb on - strand, within Atu5426 at 421.118 kb on - strand, within Atu5426 at 421.143 kb on + strand, within Atu5426 at 421.143 kb on + strand, within Atu5426 at 421.201 kb on - strand, within Atu5426 at 421.222 kb on + strand, within Atu5426 at 421.222 kb on + strand, within Atu5426 at 421.366 kb on + strand, within Atu5426 at 421.382 kb on - strand, within Atu5426 at 421.438 kb on + strand at 421.581 kb on + strand, within Atu5427 at 421.607 kb on - strand, within Atu5427 at 421.610 kb on + strand, within Atu5427 at 421.663 kb on - strand, within Atu5427 at 421.757 kb on - strand, within Atu5427 at 421.787 kb on + strand, within Atu5427 at 422.009 kb on - strand at 422.034 kb on - strand at 422.039 kb on - strand at 422.068 kb on - strand at 422.078 kb on + strand at 422.174 kb on + strand at 422.182 kb on + strand at 422.236 kb on + strand, within Atu5428 at 422.241 kb on + strand, within Atu5428 at 422.244 kb on - strand, within Atu5428 at 422.244 kb on - strand, within Atu5428 at 422.246 kb on + strand, within Atu5428 at 422.249 kb on - strand, within Atu5428 at 422.291 kb on + strand, within Atu5428 at 422.426 kb on - strand, within Atu5428 at 422.505 kb on - strand, within Atu5428 at 422.593 kb on - strand, within Atu5428 at 422.611 kb on + strand, within Atu5428 at 422.640 kb on + strand, within Atu5428 at 422.648 kb on - strand, within Atu5428 at 422.698 kb on - strand, within Atu5428 at 422.698 kb on - strand, within Atu5428 at 422.739 kb on - strand, within Atu5428 at 422.748 kb on - strand, within Atu5428 at 422.798 kb on - strand, within Atu5428 at 422.840 kb on - strand, within Atu5428 at 422.885 kb on + strand, within Atu5428
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 420,535 + Atu5425 0.27 -0.1 420,549 + Atu5425 0.30 +0.3 420,675 + Atu5425 0.51 +0.5 420,683 - Atu5425 0.52 -0.0 420,686 + Atu5425 0.53 +0.6 420,706 - Atu5425 0.56 -0.2 420,730 - Atu5425 0.60 -1.0 420,743 - Atu5425 0.62 +0.0 420,799 - Atu5425 0.72 +0.3 420,799 - Atu5425 0.72 -0.3 420,816 - Atu5425 0.75 +0.3 420,841 + Atu5425 0.79 +0.6 420,852 + Atu5425 0.81 -0.1 420,919 + -0.1 420,922 - -0.0 420,927 - -0.7 420,986 + -0.2 421,025 - Atu5426 0.10 -0.2 421,029 + Atu5426 0.11 -2.7 421,074 - Atu5426 0.20 +0.6 421,118 - Atu5426 0.28 -1.4 421,143 + Atu5426 0.33 +0.2 421,143 + Atu5426 0.33 -0.6 421,201 - Atu5426 0.45 +0.2 421,222 + Atu5426 0.49 +0.1 421,222 + Atu5426 0.49 -0.2 421,366 + Atu5426 0.77 -0.4 421,382 - Atu5426 0.80 +1.1 421,438 + +0.3 421,581 + Atu5427 0.17 +0.7 421,607 - Atu5427 0.22 -0.4 421,610 + Atu5427 0.22 +0.9 421,663 - Atu5427 0.31 +0.4 421,757 - Atu5427 0.47 -0.2 421,787 + Atu5427 0.53 +0.2 422,009 - +0.3 422,034 - +1.3 422,039 - +0.9 422,068 - -1.3 422,078 + +0.2 422,174 + -0.1 422,182 + +0.6 422,236 + Atu5428 0.13 +0.6 422,241 + Atu5428 0.13 +1.6 422,244 - Atu5428 0.14 -0.4 422,244 - Atu5428 0.14 -0.3 422,246 + Atu5428 0.14 -0.1 422,249 - Atu5428 0.14 +0.4 422,291 + Atu5428 0.17 -0.8 422,426 - Atu5428 0.27 +0.3 422,505 - Atu5428 0.33 +1.2 422,593 - Atu5428 0.40 -1.0 422,611 + Atu5428 0.41 +0.0 422,640 + Atu5428 0.43 +0.0 422,648 - Atu5428 0.44 -0.2 422,698 - Atu5428 0.48 +0.1 422,698 - Atu5428 0.48 -0.2 422,739 - Atu5428 0.51 -0.5 422,748 - Atu5428 0.51 +0.5 422,798 - Atu5428 0.55 -0.2 422,840 - Atu5428 0.58 -0.2 422,885 + Atu5428 0.62 +0.2
Or see this region's nucleotide sequence