Strain Fitness in Agrobacterium fabrum C58 around Atu4607

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,752,029	-		Atu4606	0.60	+0.6
1,752,123	-		Atu4606	0.66	-0.5
1,752,150	-		Atu4606	0.68	+0.2
1,752,161	+		Atu4606	0.68	-0.2
1,752,270	+		Atu4606	0.75	-0.5
1,752,692	+				-0.0
1,752,692	+				+0.3
1,752,890	-				+1.2
1,752,890	-				+0.9
1,752,944	+				-0.1
1,752,963	+				-0.1
1,752,971	-				+0.6
1,752,973	+				+0.4
1,752,996	-				-0.1
1,753,069	+				+0.6
1,753,118	+		Atu4607	0.12	+0.3
1,753,125	-		Atu4607	0.13	+0.3
1,753,168	-		Atu4607	0.17	+2.4
1,753,209	+		Atu4607	0.20	+0.4
1,753,217	+		Atu4607	0.21	-0.1
1,753,217	-		Atu4607	0.21	+1.0
1,753,286	+		Atu4607	0.27	+1.4
1,753,360	-		Atu4607	0.34	+0.5
1,753,364	-		Atu4607	0.34	+0.3
1,753,408	-		Atu4607	0.38	-0.1
1,753,430	-		Atu4607	0.40	+0.3
1,753,519	-		Atu4607	0.48	-0.7
1,753,530	-		Atu4607	0.49	+0.4
1,753,565	-		Atu4607	0.52	+0.0
1,753,778	-		Atu4607	0.71	-1.4
1,753,799	-		Atu4607	0.73	-0.4
1,753,867	+		Atu4607	0.79	+0.2
1,753,946	+		Atu4607	0.86	+1.0
1,754,004	-				+0.2
1,754,033	-				-0.2
1,754,053	-				-0.3
1,754,163	+				+0.3
1,754,230	-				+0.6
1,754,258	+				-0.7
1,754,258	+				+0.4
1,754,258	+				+0.0
1,754,266	-				+0.0
1,754,266	-				+0.3
1,754,303	+		Atu4608	0.11	+0.1
1,754,311	-		Atu4608	0.11	+0.4
1,754,394	-		Atu4608	0.16	+0.2
1,754,466	-		Atu4608	0.20	+0.1
1,754,466	-		Atu4608	0.20	+0.7
1,754,473	+		Atu4608	0.20	+0.6
1,754,534	+		Atu4608	0.23	+0.6
1,754,679	+		Atu4608	0.31	+0.6
1,754,679	+		Atu4608	0.31	+0.3
1,754,687	-		Atu4608	0.32	+0.6
1,754,699	-		Atu4608	0.32	+0.2
1,754,709	-		Atu4608	0.33	+0.4
1,754,975	+		Atu4608	0.47	+0.8
1,754,993	-		Atu4608	0.48	+0.0
1,754,993	-		Atu4608	0.48	+0.6
1,755,015	-		Atu4608	0.49	-0.2
1,755,085	+		Atu4608	0.53	+0.1
1,755,085	+		Atu4608	0.53	+1.0