Strain Fitness in Agrobacterium fabrum C58 around Atu4583

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,730,551	+				+0.2
1,730,551	+				+0.2
1,730,556	+				-0.3
1,730,587	+		Atu4581	0.14	+0.1
1,730,612	+		Atu4581	0.18	-0.5
1,730,630	+		Atu4581	0.22	+0.2
1,730,669	-		Atu4581	0.29	-0.3
1,730,669	-		Atu4581	0.29	+0.0
1,730,717	+		Atu4581	0.38	-0.7
1,730,776	-		Atu4581	0.49	+0.5
1,730,955	+		Atu4581	0.83	-0.1
1,731,006	+				+0.4
1,731,034	+				-0.0
1,731,073	+				+0.7
1,731,089	-				+0.5
1,731,146	-		Atu4582	0.17	+0.2
1,731,286	+		Atu4582	0.59	+0.2
1,731,367	+		Atu4582	0.83	+0.8
1,731,375	-		Atu4582	0.85	-0.0
1,731,375	-		Atu4582	0.85	-0.3
1,731,375	-		Atu4582	0.85	-0.1
1,731,385	-		Atu4582	0.88	-0.3
1,731,385	-		Atu4582	0.88	-0.3
1,731,427	-				+0.5
1,731,427	-				-0.2
1,731,454	+				-0.1
1,731,462	+				-1.2
1,731,497	-				-0.2
1,731,505	-				+0.6
1,731,546	+				-0.1
1,731,598	-		Atu4583	0.12	+0.7
1,731,654	-		Atu4583	0.21	+0.2
1,731,668	-		Atu4583	0.23	+0.3
1,731,761	+		Atu4583	0.39	+0.4
1,731,922	-		Atu4583	0.66	-0.9
1,731,937	+		Atu4583	0.68	+0.4
1,732,014	-		Atu4583	0.81	+0.4
1,732,018	+		Atu4583	0.81	+0.4
1,732,062	+		Atu4583	0.89	+0.1
1,732,097	+				+1.0
1,732,097	+				+0.0
1,732,097	+				-1.0
1,732,097	-				+0.1
1,732,097	-				+0.6
1,732,105	-				-0.4
1,732,105	-				-0.2
1,732,105	-				+0.0
1,732,132	-				+0.2
1,732,132	-				-0.1
1,732,138	-				+0.3
1,732,161	+				-1.0
1,732,223	-				+0.3
1,732,373	+		Atu4584	0.14	-0.2
1,732,433	-		Atu4584	0.25	-0.2
1,732,435	+		Atu4584	0.25	-0.3
1,732,435	+		Atu4584	0.25	-0.5
1,732,435	+		Atu4584	0.25	-0.4
1,732,438	-		Atu4584	0.25	-0.0
1,732,452	+		Atu4584	0.28	+0.2
1,732,482	+		Atu4584	0.33	+0.1
1,732,520	-		Atu4584	0.40	+0.2
1,732,542	-		Atu4584	0.44	+0.6
1,732,542	-		Atu4584	0.44	-0.6
1,732,571	-		Atu4584	0.49	+0.1
1,732,675	-		Atu4584	0.67	-0.1
1,732,727	+		Atu4584	0.76	-0.9
1,732,735	-		Atu4584	0.78	+0.1
1,732,776	+		Atu4584	0.85	-0.6
1,732,785	+		Atu4584	0.86	-0.3
1,732,822	+				-0.4
1,732,838	-				-0.4
1,733,004	+		Atu4585	0.18	-0.9
1,733,087	+		Atu4585	0.34	-0.1