Strain Fitness in Agrobacterium fabrum C58 around Atu4239

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,362,746	+				+0.2
1,362,788	-				-0.0
1,362,819	-				-0.3
1,362,824	-				-0.2
1,362,831	+				+0.1
1,362,857	+				+0.8
1,362,904	+		Atu4238	0.13	+0.2
1,362,952	+		Atu4238	0.19	+0.4
1,363,073	-		Atu4238	0.33	+1.6
1,363,196	-		Atu4238	0.48	-0.5
1,363,308	+		Atu4238	0.61	+0.9
1,363,471	-		Atu4238	0.80	-0.3
1,363,486	+		Atu4238	0.82	-0.3
1,363,515	-		Atu4238	0.86	+1.1
1,363,540	-		Atu4238	0.89	+0.1
1,363,562	-				-0.3
1,363,645	+				+0.4
1,363,653	-				+0.4
1,363,776	-		Atu4239	0.15	+1.6
1,363,883	+		Atu4239	0.27	+0.7
1,363,883	+		Atu4239	0.27	+2.3
1,363,910	+		Atu4239	0.30	-0.1
1,363,971	+		Atu4239	0.36	-0.6
1,364,023	+		Atu4239	0.42	+1.1
1,364,052	+		Atu4239	0.45	+0.4
1,364,072	-		Atu4239	0.47	-0.7
1,364,144	+		Atu4239	0.55	-0.1
1,364,166	+		Atu4239	0.57	+0.2
1,364,194	-		Atu4239	0.60	+1.3
1,364,312	-		Atu4239	0.72	-0.4
1,364,380	+		Atu4239	0.80	+0.1
1,364,391	+		Atu4239	0.81	+1.1
1,364,522	-				+0.9
1,364,543	-				-0.4
1,364,623	-				+0.5
1,364,626	-				+0.1
1,364,699	+		Atu4240	0.13	+0.3
1,364,725	+		Atu4240	0.15	-0.1
1,364,761	-		Atu4240	0.19	+0.3
1,364,779	+		Atu4240	0.20	+0.2
1,365,011	+		Atu4240	0.43	-0.1
1,365,056	-		Atu4240	0.47	-0.5
1,365,079	+		Atu4240	0.49	+1.2
1,365,114	+		Atu4240	0.53	-0.0
1,365,204	-		Atu4240	0.61	+0.1
1,365,363	+		Atu4240	0.76	+0.0
1,365,439	+		Atu4240	0.84	+0.4
1,365,478	+		Atu4240	0.88	+0.1
1,365,493	+		Atu4240	0.89	+0.0
1,365,494	+		Atu4240	0.89	+0.1
1,365,501	-		Atu4240	0.90	+0.3
1,365,562	+				-1.0