Strain Fitness in Agrobacterium fabrum C58 around Atu4028

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,141,856	-		Atu4026	0.18	-0.6
1,141,866	+		Atu4026	0.20	-1.1
1,141,877	+		Atu4026	0.22	-1.8
1,141,975	-		Atu4026	0.40	-0.3
1,141,985	-		Atu4026	0.42	+0.6
1,142,001	+		Atu4026	0.45	-0.1
1,142,030	+		Atu4026	0.51	-1.4
1,142,050	+		Atu4026	0.55	-1.6
1,142,064	+		Atu4026	0.57	-0.4
1,142,074	+		Atu4026	0.59	+0.2
1,142,117	+		Atu4026	0.67	-0.5
1,142,125	-		Atu4026	0.69	-0.6
1,142,213	-		Atu4026	0.85	-0.1
1,142,300	+				+0.7
1,142,305	+				+0.5
1,142,313	-				+0.4
1,142,340	-		Atu4027	0.11	+0.2
1,142,452	+		Atu4027	0.33	-0.4
1,142,642	-		Atu4027	0.71	-0.3
1,142,647	-		Atu4027	0.72	-0.1
1,142,647	-		Atu4027	0.72	+0.2
1,142,647	-		Atu4027	0.72	-0.4
1,142,787	+				+0.2
1,142,795	-				+0.2
1,143,032	+		Atu4028	0.48	-0.1
1,143,035	-		Atu4028	0.48	+0.9
1,143,057	+		Atu4028	0.53	+0.7
1,143,165	+		Atu4028	0.74	+0.8
1,143,173	-		Atu4028	0.75	-0.1
1,143,173	-		Atu4028	0.75	+1.2
1,143,178	-		Atu4028	0.76	-0.5
1,143,254	+				-0.3
1,143,256	+				+0.1
1,143,330	-				+0.1
1,143,413	-				+0.6
1,143,414	+				-0.3
1,143,576	-		Atu4029	0.14	+0.6
1,143,713	+		Atu4029	0.29	+0.7
1,143,713	+		Atu4029	0.29	-0.3
1,143,713	+		Atu4029	0.29	-0.2
1,143,721	-		Atu4029	0.29	+1.0
1,143,864	-		Atu4029	0.45	-0.8
1,143,901	-		Atu4029	0.49	+0.7
1,144,033	-		Atu4029	0.63	-0.1
1,144,094	+		Atu4029	0.70	+0.8
1,144,233	+		Atu4029	0.85	+0.2