Strain Fitness in Agrobacterium fabrum C58 around Atu3996

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,109,471	-				-0.3
1,109,489	-		Atu3995	0.12	-0.3
1,109,501	-		Atu3995	0.14	+0.2
1,109,591	+		Atu3995	0.25	-0.7
1,109,650	+		Atu3995	0.32	-0.8
1,109,659	+		Atu3995	0.34	-0.0
1,109,707	+		Atu3995	0.40	+0.3
1,109,715	-		Atu3995	0.41	-0.3
1,109,715	-		Atu3995	0.41	-1.2
1,109,722	+		Atu3995	0.42	-0.2
1,109,724	+		Atu3995	0.42	+0.4
1,109,724	+		Atu3995	0.42	+0.0
1,109,724	+		Atu3995	0.42	-0.4
1,109,724	+		Atu3995	0.42	-0.8
1,109,725	-		Atu3995	0.42	+0.1
1,109,729	+		Atu3995	0.42	-0.4
1,109,730	-		Atu3995	0.43	+0.2
1,109,793	+		Atu3995	0.51	-0.1
1,109,815	+		Atu3995	0.53	+0.1
1,109,832	-		Atu3995	0.56	-0.5
1,109,833	-		Atu3995	0.56	-0.4
1,109,839	+		Atu3995	0.56	-0.3
1,109,839	+		Atu3995	0.56	-1.0
1,109,847	-		Atu3995	0.57	+0.1
1,109,886	+		Atu3995	0.62	+0.2
1,109,947	-		Atu3995	0.70	+0.5
1,110,017	-		Atu3995	0.79	-1.6
1,110,017	-		Atu3995	0.79	+0.2
1,110,051	-		Atu3995	0.83	+0.5
1,110,128	-				-0.0
1,110,204	-				+1.1
1,110,227	+				+0.9
1,110,240	-				-0.3
1,110,257	+				+0.0
1,110,268	-				+0.0
1,110,293	+				+0.0
1,110,301	-				+0.2
1,110,301	-				-0.7
1,110,301	-				-0.1
1,110,364	+				-0.3
1,110,364	+				+0.2
1,110,372	-				+0.2
1,110,431	+				+0.4
1,110,441	+		Atu3996	0.11	+4.0
1,110,455	+		Atu3996	0.14	-0.0
1,110,508	+		Atu3996	0.26	-0.2
1,110,508	+		Atu3996	0.26	+0.8
1,110,570	-		Atu3996	0.40	-0.0
1,110,572	+		Atu3996	0.40	+0.1
1,110,579	+		Atu3996	0.42	+0.4
1,110,662	+		Atu3996	0.60	+0.9
1,110,665	-		Atu3996	0.61	-0.8
1,110,684	-		Atu3996	0.65	+0.2
1,110,717	-		Atu3996	0.72	+0.5
1,110,717	-		Atu3996	0.72	+0.4
1,110,847	-				-0.2
1,110,938	+				+0.2
1,110,946	-				+0.1
1,111,139	+				+0.5
1,111,183	+		Atu3997	0.11	-0.1
1,111,282	-		Atu3997	0.21	-0.3
1,111,322	+		Atu3997	0.25	-0.3
1,111,346	-		Atu3997	0.27	-0.5
1,111,427	+		Atu3997	0.35	-0.6
1,111,427	+		Atu3997	0.35	-0.1
1,111,427	+		Atu3997	0.35	-0.5
1,111,427	+		Atu3997	0.35	-0.8
1,111,427	+		Atu3997	0.35	+0.0
1,111,427	+		Atu3997	0.35	+0.1
1,111,427	+		Atu3997	0.35	+0.1
1,111,430	-		Atu3997	0.35	-0.2
1,111,435	-		Atu3997	0.36	+1.4
1,111,435	-		Atu3997	0.36	-0.3
1,111,435	-		Atu3997	0.36	+0.2
1,111,435	-		Atu3997	0.36	-0.1
1,111,435	-		Atu3997	0.36	+0.1
1,111,504	+		Atu3997	0.42	+0.4
1,111,545	-		Atu3997	0.46	-0.5
1,111,558	+		Atu3997	0.48	-0.1
1,111,560	-		Atu3997	0.48	-0.4
1,111,583	+		Atu3997	0.50	-0.3
1,111,682	-		Atu3997	0.60	-0.1
1,111,742	-		Atu3997	0.66	+0.1
1,111,807	+		Atu3997	0.72	+0.1