Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3528 and Atu3529 overlap by 4 nucleotides Atu3529 and Atu3530 are separated by 3 nucleotides
Atu3528: Atu3528 - oxidoreductase, at 577,129 to 578,118
Atu3528
Atu3529: Atu3529 - mannonate dehydratase, at 578,115 to 579,308
Atu3529
Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784
Atu3530
Position (kb) 578
579
580 Strain fitness (log2 ratio) -1
0
1
2 at 577.182 kb on - strand at 577.216 kb on + strand at 577.250 kb on - strand, within Atu3528 at 577.328 kb on + strand, within Atu3528 at 577.337 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.394 kb on - strand, within Atu3528 at 577.414 kb on + strand, within Atu3528 at 577.415 kb on - strand, within Atu3528 at 577.497 kb on - strand, within Atu3528 at 577.505 kb on - strand, within Atu3528 at 577.556 kb on - strand, within Atu3528 at 577.601 kb on + strand, within Atu3528 at 577.602 kb on - strand, within Atu3528 at 577.621 kb on - strand, within Atu3528 at 577.685 kb on - strand, within Atu3528 at 577.692 kb on + strand, within Atu3528 at 577.707 kb on + strand, within Atu3528 at 577.748 kb on - strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.753 kb on - strand, within Atu3528 at 577.754 kb on - strand, within Atu3528 at 577.947 kb on + strand, within Atu3528 at 577.950 kb on - strand, within Atu3528 at 578.035 kb on + strand at 578.163 kb on - strand at 578.193 kb on - strand at 578.193 kb on - strand at 578.258 kb on + strand, within Atu3529 at 578.312 kb on - strand, within Atu3529 at 578.501 kb on + strand, within Atu3529 at 578.509 kb on - strand, within Atu3529 at 578.510 kb on - strand, within Atu3529 at 578.684 kb on + strand, within Atu3529 at 578.743 kb on + strand, within Atu3529 at 578.751 kb on - strand, within Atu3529 at 578.944 kb on + strand, within Atu3529 at 579.042 kb on - strand, within Atu3529 at 579.112 kb on - strand, within Atu3529 at 579.130 kb on + strand, within Atu3529 at 579.132 kb on + strand, within Atu3529 at 579.207 kb on + strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.265 kb on - strand at 579.317 kb on - strand at 579.354 kb on + strand at 579.362 kb on - strand at 579.362 kb on - strand at 579.407 kb on - strand at 579.486 kb on + strand, within Atu3530 at 579.491 kb on + strand, within Atu3530 at 579.494 kb on - strand, within Atu3530 at 579.519 kb on + strand, within Atu3530 at 579.556 kb on + strand, within Atu3530 at 579.561 kb on + strand, within Atu3530 at 579.669 kb on + strand, within Atu3530 at 579.736 kb on + strand, within Atu3530 at 579.743 kb on - strand, within Atu3530 at 579.826 kb on - strand, within Atu3530 at 579.858 kb on - strand, within Atu3530 at 579.906 kb on - strand, within Atu3530 at 580.040 kb on - strand, within Atu3530 at 580.052 kb on - strand, within Atu3530 at 580.196 kb on + strand, within Atu3530 at 580.204 kb on - strand, within Atu3530 at 580.231 kb on + strand, within Atu3530 at 580.247 kb on + strand, within Atu3530 at 580.257 kb on - strand, within Atu3530
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 577,182 - +0.3 577,216 + +0.4 577,250 - Atu3528 0.12 -0.7 577,328 + Atu3528 0.20 +0.5 577,337 + Atu3528 0.21 -0.8 577,358 + Atu3528 0.23 -0.1 577,358 + Atu3528 0.23 -0.0 577,394 - Atu3528 0.27 +0.8 577,414 + Atu3528 0.29 -0.2 577,415 - Atu3528 0.29 +0.6 577,497 - Atu3528 0.37 +0.0 577,505 - Atu3528 0.38 +0.5 577,556 - Atu3528 0.43 -0.1 577,601 + Atu3528 0.48 +0.0 577,602 - Atu3528 0.48 +1.4 577,621 - Atu3528 0.50 -0.1 577,685 - Atu3528 0.56 +0.7 577,692 + Atu3528 0.57 -0.9 577,707 + Atu3528 0.58 +1.0 577,748 - Atu3528 0.63 +0.8 577,752 + Atu3528 0.63 -1.1 577,752 + Atu3528 0.63 -0.2 577,753 - Atu3528 0.63 +0.5 577,754 - Atu3528 0.63 +0.1 577,947 + Atu3528 0.83 +0.2 577,950 - Atu3528 0.83 -0.4 578,035 + -0.2 578,163 - +0.5 578,193 - -0.3 578,193 - +0.7 578,258 + Atu3529 0.12 +0.2 578,312 - Atu3529 0.16 +1.4 578,501 + Atu3529 0.32 +1.7 578,509 - Atu3529 0.33 +0.6 578,510 - Atu3529 0.33 -0.2 578,684 + Atu3529 0.48 -0.9 578,743 + Atu3529 0.53 -0.2 578,751 - Atu3529 0.53 -0.7 578,944 + Atu3529 0.69 +0.7 579,042 - Atu3529 0.78 +0.1 579,112 - Atu3529 0.84 +0.2 579,130 + Atu3529 0.85 +0.4 579,132 + Atu3529 0.85 +0.2 579,207 + +0.1 579,221 - -1.1 579,221 - +0.7 579,221 - +1.0 579,265 - -0.0 579,317 - +0.2 579,354 + -0.1 579,362 - +0.4 579,362 - -0.2 579,407 - -0.0 579,486 + Atu3530 0.12 -0.3 579,491 + Atu3530 0.12 +0.1 579,494 - Atu3530 0.12 +0.1 579,519 + Atu3530 0.14 +0.2 579,556 + Atu3530 0.17 -0.2 579,561 + Atu3530 0.17 -0.2 579,669 + Atu3530 0.24 +0.4 579,736 + Atu3530 0.29 +0.0 579,743 - Atu3530 0.29 +0.4 579,826 - Atu3530 0.35 +0.7 579,858 - Atu3530 0.37 -0.1 579,906 - Atu3530 0.40 -0.1 580,040 - Atu3530 0.49 +1.1 580,052 - Atu3530 0.50 -0.1 580,196 + Atu3530 0.60 -0.2 580,204 - Atu3530 0.61 +0.3 580,231 + Atu3530 0.62 +0.5 580,247 + Atu3530 0.63 +2.3 580,257 - Atu3530 0.64 +0.8
Or see this region's nucleotide sequence