Strain Fitness in Agrobacterium fabrum C58 around Atu3324
Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Indole-3-butyric 5 mM |
---|---|---|---|---|---|
remove | |||||
356,976 | + | Atu3323 | 0.40 | -2.0 | |
357,106 | + | Atu3323 | 0.49 | -0.0 | |
357,155 | - | Atu3323 | 0.53 | -0.6 | |
357,322 | + | Atu3323 | 0.65 | -0.2 | |
357,374 | + | Atu3323 | 0.69 | -1.3 | |
357,380 | + | Atu3323 | 0.69 | +0.2 | |
357,498 | + | Atu3323 | 0.78 | -0.0 | |
357,613 | - | Atu3323 | 0.87 | +0.6 | |
357,620 | - | Atu3323 | 0.87 | -0.2 | |
357,621 | + | Atu3323 | 0.87 | -0.0 | |
357,631 | - | Atu3323 | 0.88 | +0.4 | |
357,719 | - | -0.0 | |||
357,808 | + | +1.7 | |||
357,816 | - | -0.1 | |||
357,850 | + | +0.7 | |||
357,897 | - | -0.8 | |||
357,932 | + | Atu3324 | 0.11 | +0.6 | |
358,075 | - | Atu3324 | 0.40 | +2.0 | |
358,096 | - | Atu3324 | 0.44 | +0.0 | |
358,200 | + | Atu3324 | 0.65 | -0.0 | |
358,220 | + | Atu3324 | 0.69 | +0.3 | |
358,263 | - | Atu3324 | 0.78 | -0.3 | |
358,321 | - | Atu3324 | 0.89 | +1.0 | |
358,421 | - | +0.3 |
Or see this region's nucleotide sequence