Strain Fitness in Agrobacterium fabrum C58 around Atu3051

Experiment: Indole-3-butyric 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3050 and Atu3051 are separated by 1 nucleotidesAtu3051 and Atu3052 overlap by 4 nucleotidesAtu3052 and Atu3053 are separated by 288 nucleotides Atu3050: Atu3050 - AgaE protein, at 47,297 to 48,628 Atu3050 Atu3051: Atu3051 - agropine synthesis reductase, at 48,630 to 49,340 Atu3051 Atu3052: Atu3052 - MarR family transcriptional regulator, at 49,337 to 49,822 Atu3052 Atu3053: Atu3053 - peptide ABC transporter ATPase, at 50,111 to 51,757 Atu3053 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 47.657 kb on - strand, within Atu3050at 47.673 kb on - strand, within Atu3050at 47.851 kb on + strand, within Atu3050at 47.878 kb on + strand, within Atu3050at 47.918 kb on + strand, within Atu3050at 47.933 kb on - strand, within Atu3050at 47.943 kb on - strand, within Atu3050at 47.943 kb on - strand, within Atu3050at 47.974 kb on + strand, within Atu3050at 47.982 kb on - strand, within Atu3050at 48.043 kb on - strand, within Atu3050at 48.068 kb on + strand, within Atu3050at 48.089 kb on + strand, within Atu3050at 48.112 kb on + strand, within Atu3050at 48.166 kb on - strand, within Atu3050at 48.168 kb on + strand, within Atu3050at 48.168 kb on + strand, within Atu3050at 48.176 kb on - strand, within Atu3050at 48.176 kb on - strand, within Atu3050at 48.188 kb on + strand, within Atu3050at 48.231 kb on - strand, within Atu3050at 48.272 kb on + strand, within Atu3050at 48.314 kb on + strand, within Atu3050at 48.314 kb on + strand, within Atu3050at 48.329 kb on + strand, within Atu3050at 48.409 kb on - strand, within Atu3050at 48.464 kb on + strand, within Atu3050at 48.468 kb on + strand, within Atu3050at 48.493 kb on + strand, within Atu3050at 48.529 kb on + strandat 48.576 kb on + strandat 48.604 kb on - strandat 48.626 kb on - strandat 48.717 kb on + strand, within Atu3051at 48.826 kb on - strand, within Atu3051at 48.990 kb on - strand, within Atu3051at 49.011 kb on - strand, within Atu3051at 49.011 kb on - strand, within Atu3051at 49.048 kb on + strand, within Atu3051at 49.122 kb on + strand, within Atu3051at 49.160 kb on + strand, within Atu3051at 49.173 kb on - strand, within Atu3051at 49.175 kb on + strand, within Atu3051at 49.196 kb on + strand, within Atu3051at 49.201 kb on + strand, within Atu3051at 49.209 kb on - strand, within Atu3051at 49.219 kb on + strand, within Atu3051at 49.219 kb on + strand, within Atu3051at 49.222 kb on - strand, within Atu3051at 49.227 kb on - strand, within Atu3051at 49.267 kb on + strand, within Atu3051at 49.282 kb on + strandat 49.485 kb on + strand, within Atu3052at 49.487 kb on + strand, within Atu3052at 49.495 kb on - strand, within Atu3052at 49.682 kb on + strand, within Atu3052at 49.756 kb on - strand, within Atu3052at 50.029 kb on - strandat 50.117 kb on - strandat 50.138 kb on + strandat 50.138 kb on + strandat 50.153 kb on + strandat 50.224 kb on + strandat 50.295 kb on - strand, within Atu3053

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM
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47,657 - Atu3050 0.27 +0.2
47,673 - Atu3050 0.28 +0.0
47,851 + Atu3050 0.42 -0.4
47,878 + Atu3050 0.44 +0.0
47,918 + Atu3050 0.47 -0.0
47,933 - Atu3050 0.48 +0.6
47,943 - Atu3050 0.48 +1.2
47,943 - Atu3050 0.48 +0.1
47,974 + Atu3050 0.51 +0.1
47,982 - Atu3050 0.51 -0.6
48,043 - Atu3050 0.56 -0.8
48,068 + Atu3050 0.58 -0.1
48,089 + Atu3050 0.59 +0.1
48,112 + Atu3050 0.61 -0.8
48,166 - Atu3050 0.65 +0.3
48,168 + Atu3050 0.65 +0.4
48,168 + Atu3050 0.65 +0.1
48,176 - Atu3050 0.66 -0.5
48,176 - Atu3050 0.66 +0.2
48,188 + Atu3050 0.67 -0.2
48,231 - Atu3050 0.70 -0.1
48,272 + Atu3050 0.73 +0.3
48,314 + Atu3050 0.76 -0.7
48,314 + Atu3050 0.76 +0.2
48,329 + Atu3050 0.77 -1.0
48,409 - Atu3050 0.83 -1.9
48,464 + Atu3050 0.88 +1.5
48,468 + Atu3050 0.88 -0.4
48,493 + Atu3050 0.90 +0.7
48,529 + +0.1
48,576 + +1.2
48,604 - +0.4
48,626 - +0.2
48,717 + Atu3051 0.12 -0.4
48,826 - Atu3051 0.28 +1.1
48,990 - Atu3051 0.51 +0.6
49,011 - Atu3051 0.54 -0.2
49,011 - Atu3051 0.54 +0.7
49,048 + Atu3051 0.59 -0.8
49,122 + Atu3051 0.69 -0.1
49,160 + Atu3051 0.75 -0.3
49,173 - Atu3051 0.76 +0.1
49,175 + Atu3051 0.77 +0.4
49,196 + Atu3051 0.80 +0.0
49,201 + Atu3051 0.80 +0.3
49,209 - Atu3051 0.81 +0.4
49,219 + Atu3051 0.83 -0.0
49,219 + Atu3051 0.83 +0.9
49,222 - Atu3051 0.83 +0.2
49,227 - Atu3051 0.84 +0.0
49,267 + Atu3051 0.90 +0.7
49,282 + -0.0
49,485 + Atu3052 0.30 +0.0
49,487 + Atu3052 0.31 -0.3
49,495 - Atu3052 0.33 -0.3
49,682 + Atu3052 0.71 +0.2
49,756 - Atu3052 0.86 +0.7
50,029 - +0.1
50,117 - -0.0
50,138 + -0.1
50,138 + -0.1
50,153 + +0.3
50,224 + +0.1
50,295 - Atu3053 0.11 +0.4

Or see this region's nucleotide sequence