Strain Fitness in Agrobacterium fabrum C58 around Atu2475

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
2,442,605	+				+0.0
2,442,621	-				+0.2
2,442,725	-		Atu2474	0.18	+0.3
2,442,744	+		Atu2474	0.20	-0.2
2,442,759	+		Atu2474	0.22	+0.1
2,442,777	-		Atu2474	0.23	-0.4
2,442,974	-		Atu2474	0.43	-0.2
2,442,989	-		Atu2474	0.44	+0.2
2,443,029	+		Atu2474	0.48	+0.2
2,443,088	-		Atu2474	0.54	+0.3
2,443,098	-		Atu2474	0.55	-0.0
2,443,174	-		Atu2474	0.62	+0.1
2,443,280	+		Atu2474	0.72	-0.0
2,443,300	+		Atu2474	0.74	+0.2
2,443,355	-		Atu2474	0.80	-0.1
2,443,383	+		Atu2474	0.82	+0.4
2,443,476	-				+0.0
2,443,541	-				-0.8
2,443,559	+				-0.4
2,443,651	+				-0.3
2,443,651	+				-0.2
2,443,651	+				-0.1
2,443,658	+		Atu2475	0.10	+0.1
2,443,746	-		Atu2475	0.20	+1.1
2,443,748	+		Atu2475	0.20	+0.4
2,443,817	+		Atu2475	0.27	-1.1
2,443,835	-		Atu2475	0.29	+0.5
2,443,979	+		Atu2475	0.44	+0.5
2,443,979	+		Atu2475	0.44	-0.1
2,444,043	-		Atu2475	0.50	+0.1
2,444,126	+		Atu2475	0.59	-0.1
2,444,146	+		Atu2475	0.61	+0.3
2,444,485	-				+1.1
2,444,497	+				-0.2
2,444,532	-				+0.7
2,444,543	+				+0.1
2,444,650	+		Atu2476	0.17	+0.2
2,444,658	-		Atu2476	0.18	-0.4
2,444,683	+		Atu2476	0.21	-0.5
2,444,706	+		Atu2476	0.24	-0.1
2,444,706	+		Atu2476	0.24	-0.1
2,444,706	+		Atu2476	0.24	+0.3
2,444,706	+		Atu2476	0.24	+0.1
2,444,714	-		Atu2476	0.25	+0.7
2,444,714	-		Atu2476	0.25	-0.2
2,444,716	+		Atu2476	0.26	-0.0
2,444,784	-		Atu2476	0.35	+0.2
2,444,795	+		Atu2476	0.36	-0.4
2,444,814	-		Atu2476	0.38	-0.2
2,444,842	+		Atu2476	0.42	-0.1
2,444,847	+		Atu2476	0.43	-1.5
2,444,860	+		Atu2476	0.45	+1.1
2,444,868	-		Atu2476	0.46	-1.1
2,444,868	-		Atu2476	0.46	+0.6
2,444,991	-		Atu2476	0.62	-0.1
2,445,007	+		Atu2476	0.64	-0.7
2,445,190	+		Atu2476	0.88	+0.2
2,445,315	+				+1.3
2,445,321	-				-0.1
2,445,325	+				-0.7
2,445,388	+				-0.1