Strain Fitness in Agrobacterium fabrum C58 around Atu2295

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
2,268,161	+		Atu2293	0.52	+0.1
2,268,237	+		Atu2293	0.66	-0.0
2,268,277	+		Atu2293	0.73	-1.6
2,268,386	+				+0.4
2,268,449	-				-0.1
2,268,710	-		Atu2294	0.15	+0.0
2,268,777	+		Atu2294	0.29	-0.0
2,268,785	-		Atu2294	0.31	+0.2
2,268,854	+		Atu2294	0.46	+0.5
2,268,942	-		Atu2294	0.65	-0.1
2,269,156	+				+0.1
2,269,159	+				-0.0
2,269,167	-				-0.2
2,269,167	-				+0.1
2,269,169	+				+0.5
2,269,212	-				-0.2
2,269,276	+		Atu2295	0.10	+0.6
2,269,317	+		Atu2295	0.13	+0.4
2,269,341	-		Atu2295	0.14	-0.4
2,269,365	+		Atu2295	0.16	-0.5
2,269,420	+		Atu2295	0.19	+0.1
2,269,449	-		Atu2295	0.21	+0.2
2,269,464	-		Atu2295	0.22	+0.7
2,269,482	-		Atu2295	0.23	+0.1
2,269,538	+		Atu2295	0.26	-0.3
2,269,743	-		Atu2295	0.38	-0.1
2,269,761	+		Atu2295	0.39	+0.6
2,269,897	+		Atu2295	0.48	+0.3
2,269,932	-		Atu2295	0.50	+0.5
2,270,255	-		Atu2295	0.69	+1.0
2,270,278	-		Atu2295	0.71	-0.2
2,270,288	-		Atu2295	0.71	+0.7
2,270,316	+		Atu2295	0.73	-0.1
2,270,403	-		Atu2295	0.78	-0.2
2,270,414	+		Atu2295	0.79	+0.9
2,270,422	-		Atu2295	0.79	+0.8
2,270,619	+				+0.1
2,270,622	-				+0.1
2,270,635	+				+0.1
2,270,670	+				-0.4
2,270,680	-				+0.0
2,270,760	-				-0.8
2,270,783	+				-1.2
2,270,866	+				+0.0
2,271,056	+		Atu2296	0.11	+0.1
2,271,169	-		Atu2296	0.24	+0.1
2,271,181	+		Atu2296	0.25	+0.0
2,271,189	-		Atu2296	0.26	+0.9
2,271,204	-		Atu2296	0.28	+2.9
2,271,244	+		Atu2296	0.32	+0.0
2,271,287	+		Atu2296	0.37	+0.2
2,271,306	+		Atu2296	0.39	+0.4
2,271,434	+		Atu2296	0.54	-0.2
2,271,470	+		Atu2296	0.58	-0.2
2,271,470	+		Atu2296	0.58	-0.7
2,271,470	+		Atu2296	0.58	+0.0
2,271,478	-		Atu2296	0.59	+0.0
2,271,500	-		Atu2296	0.61	-0.2
2,271,555	+		Atu2296	0.67	+0.0