Strain Fitness in Agrobacterium fabrum C58 around Atu2110

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
2,073,000	+				+0.6
2,073,008	-				+0.4
2,073,040	+				+0.2
2,073,042	-				+0.9
2,073,204	-				-0.0
2,073,370	+				+0.1
2,073,373	-				-1.1
2,073,378	-				+0.5
2,073,403	+				+0.5
2,073,419	+				+0.1
2,073,470	+				-0.5
2,074,058	+				+0.5
2,074,080	-				+0.4
2,074,377	-		Atu2110	0.32	+0.8
2,074,383	-		Atu2110	0.33	+0.3
2,074,452	+		Atu2110	0.39	+0.4
2,074,489	+		Atu2110	0.42	+1.0
2,074,545	-		Atu2110	0.46	+0.2
2,074,666	-		Atu2110	0.57	+0.3
2,074,681	+		Atu2110	0.58	+0.3
2,074,689	-		Atu2110	0.58	+0.4
2,074,873	-		Atu2110	0.74	+0.2
2,074,908	-		Atu2110	0.77	-0.9
2,074,935	-		Atu2110	0.79	+0.3
2,074,968	-		Atu2110	0.82	-0.4
2,075,076	+				+0.3
2,075,083	-				-0.1
2,075,090	+				-0.6
2,075,090	+				+1.1
2,075,093	-				-0.1
2,075,098	-				+0.6
2,075,190	+				+0.1
2,075,198	-				+0.0
2,075,198	-				+0.4
2,075,332	+				+0.4
2,075,423	+		Atu2111	0.15	-0.1
2,075,443	+		Atu2111	0.17	-0.5
2,075,443	+		Atu2111	0.17	+0.4
2,075,451	-		Atu2111	0.18	+0.1
2,075,451	-		Atu2111	0.18	+0.2
2,075,451	-		Atu2111	0.18	-0.5
2,075,515	+		Atu2111	0.23	-0.2
2,075,515	+		Atu2111	0.23	+0.9
2,075,523	-		Atu2111	0.24	-0.8
2,075,558	-		Atu2111	0.27	+0.0
2,075,614	-		Atu2111	0.31	+0.3
2,075,712	+		Atu2111	0.39	+0.0
2,075,737	-		Atu2111	0.42	-0.3
2,075,739	+		Atu2111	0.42	-0.1
2,075,771	+		Atu2111	0.44	+0.1
2,075,943	+		Atu2111	0.59	+0.1
2,075,943	+		Atu2111	0.59	+0.2
2,075,986	+		Atu2111	0.63	-0.7
2,076,054	-		Atu2111	0.68	+1.9
2,076,095	-		Atu2111	0.72	-0.3
2,076,134	-		Atu2111	0.75	-0.5