Strain Fitness in Agrobacterium fabrum C58 around Atu2104

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
2,069,075	-				-0.1
2,069,295	-				+0.2
2,069,443	+				-0.5
2,069,443	+				+0.1
2,069,451	-				-0.3
2,069,451	-				+0.4
2,069,451	-				+0.1
2,069,451	-				-0.0
2,069,487	+				+0.1
2,069,487	+				-0.3
2,069,495	-				-0.1
2,069,506	+				-0.1
2,069,523	+				+0.2
2,069,524	-				-0.1
2,069,534	-				-1.8
2,069,534	-				-0.7
2,069,534	-				+0.0
2,069,534	-				-0.6
2,069,629	+				+0.1
2,069,657	+				+1.5
2,069,912	-		Atu2104	0.45	+1.7
2,070,052	+		Atu2104	0.80	+0.4
2,070,052	+		Atu2104	0.80	+0.4
2,070,052	+		Atu2104	0.80	+0.2
2,070,060	-		Atu2104	0.82	-0.2
2,070,060	-		Atu2104	0.82	-0.0
2,070,154	+				+0.3
2,070,243	-		Atu2105	0.17	+0.6
2,070,243	-		Atu2105	0.17	+0.2
2,070,254	-		Atu2105	0.19	-0.1
2,070,291	-		Atu2105	0.25	+0.3
2,070,401	-		Atu2105	0.43	+0.5
2,070,403	-		Atu2105	0.44	-0.1
2,070,429	+		Atu2105	0.48	-0.2
2,070,477	-		Atu2105	0.56	+0.0
2,070,582	+		Atu2105	0.74	+0.0
2,070,643	+		Atu2105	0.84	-0.2
2,070,655	+		Atu2105	0.86	-0.3
2,070,655	+		Atu2105	0.86	+1.9
2,070,663	-		Atu2105	0.87	+0.1
2,070,754	+				+0.4
2,070,754	+				+0.2
2,070,756	+				-0.2
2,070,762	-				+0.6
2,070,764	-				+0.0
2,070,856	+				+0.1
2,070,957	+				-0.2
2,071,101	-				+0.3