Strain Fitness in Agrobacterium fabrum C58 around Atu1536

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,525,186	+				+0.2
1,525,202	-				+0.3
1,525,237	-		Atu1534	0.13	-0.4
1,525,246	+		Atu1534	0.14	-0.3
1,525,247	-		Atu1534	0.14	-0.1
1,525,269	-		Atu1534	0.17	+1.2
1,525,269	-		Atu1534	0.17	+0.5
1,525,589	-		Atu1534	0.54	+0.5
1,525,634	-		Atu1534	0.59	+0.1
1,525,799	+		Atu1534	0.78	-0.2
1,525,820	-		Atu1534	0.81	+0.2
1,525,838	+		Atu1534	0.83	+0.0
1,525,864	-		Atu1534	0.86	-0.5
1,525,889	-		Atu1534	0.89	-0.2
1,525,908	-				-0.6
1,525,997	-				-0.2
1,526,083	+		Atu1535	0.60	-0.1
1,526,098	+		Atu1535	0.70	+0.3
1,526,120	+		Atu1535	0.84	-1.4
1,526,303	-		Atu1536	0.20	+0.3
1,526,319	+		Atu1536	0.22	+0.2
1,526,496	+		Atu1536	0.46	+0.3
1,526,696	+		Atu1536	0.74	+0.2
1,526,704	-		Atu1536	0.75	+0.2
1,526,753	-		Atu1536	0.82	+0.3
1,526,821	+				+0.1
1,526,994	-				+0.3
1,526,999	-				-0.4
1,527,011	+				+0.3
1,527,048	+				-1.8
1,527,076	+		Atu1537	0.11	+0.1
1,527,193	+		Atu1537	0.18	+2.2
1,527,315	+		Atu1537	0.26	+0.0
1,527,357	-		Atu1537	0.28	-0.5
1,527,396	+		Atu1537	0.31	+0.2
1,527,485	+		Atu1537	0.36	-0.5
1,527,511	+		Atu1537	0.38	+0.1
1,527,556	+		Atu1537	0.41	+0.0
1,527,569	-		Atu1537	0.41	-0.3
1,527,578	-		Atu1537	0.42	+0.3
1,527,580	+		Atu1537	0.42	-0.3
1,527,782	-		Atu1537	0.54	+0.2
1,527,811	-		Atu1537	0.56	-0.2