Strain Fitness in Agrobacterium fabrum C58 around Atu1482

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,472,647	-		Atu1480	0.82	-0.3
1,472,760	+				+1.5
1,472,760	+				-1.2
1,472,760	+				-1.4
1,472,768	-				-0.1
1,472,768	-				-0.2
1,472,768	-				-0.7
1,472,845	-				-0.8
1,472,929	-				-0.3
1,472,929	-				-0.2
1,472,944	+				+0.6
1,472,989	+		Atu1481	0.17	+0.0
1,473,007	-		Atu1481	0.20	+0.5
1,473,029	+		Atu1481	0.25	-0.5
1,473,235	+		Atu1481	0.66	-0.3
1,473,495	+				-0.2
1,473,495	+				+0.4
1,473,531	-				+0.2
1,473,605	-				-0.2
1,473,622	-		Atu1482	0.11	-0.0
1,473,694	+		Atu1482	0.23	+0.4
1,473,720	+		Atu1482	0.27	+0.1
1,473,776	-		Atu1482	0.36	+0.3
1,473,953	-		Atu1482	0.64	+0.0
1,474,011	-		Atu1482	0.74	-0.0
1,474,021	-		Atu1482	0.75	-0.4
1,474,027	+		Atu1482	0.76	+0.7
1,474,090	-		Atu1482	0.86	+2.1
1,474,112	+				+0.0
1,474,177	+				-0.5
1,474,185	-				-1.8
1,474,273	+				-0.2
1,474,273	+				-0.1
1,474,273	+				-0.1
1,474,273	+				+0.2
1,474,281	-				-0.1
1,474,283	+				+0.3
1,474,283	+				+0.2
1,474,293	+				+0.3
1,474,301	-				-0.1
1,474,355	+				+0.4
1,474,363	-				+0.1
1,474,589	+				+0.2
1,474,623	-		Atu1483	0.12	+0.2
1,474,699	-		Atu1483	0.24	+1.0
1,474,861	-		Atu1483	0.49	-0.1
1,474,933	+		Atu1483	0.60	+0.4
1,474,987	+		Atu1483	0.68	+0.2
1,475,107	+		Atu1483	0.87	+0.3
1,475,165	+				+0.1