Strain Fitness in Agrobacterium fabrum C58 around Atu1397

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,391,037	+				-0.3
1,391,158	-				+0.2
1,391,177	+				+0.2
1,391,177	+				-0.5
1,391,209	+				-0.3
1,391,368	-		Atu1396	0.13	+0.1
1,391,396	-		Atu1396	0.17	+0.3
1,391,460	+		Atu1396	0.25	-0.2
1,391,507	+		Atu1396	0.32	-0.3
1,391,571	-		Atu1396	0.40	+0.1
1,391,580	-		Atu1396	0.42	+0.7
1,391,635	+		Atu1396	0.49	+0.8
1,391,635	+		Atu1396	0.49	+0.2
1,391,635	+		Atu1396	0.49	-0.1
1,391,747	-		Atu1396	0.64	-0.0
1,391,768	+		Atu1396	0.67	+0.3
1,391,802	+		Atu1396	0.72	+0.2
1,391,807	+		Atu1396	0.73	-1.6
1,391,807	+		Atu1396	0.73	-0.1
1,391,810	-		Atu1396	0.73	-2.0
1,391,810	-		Atu1396	0.73	-0.4
1,391,909	+		Atu1396	0.87	+0.7
1,391,922	-		Atu1396	0.88	-0.1
1,391,937	+				+0.5
1,391,947	+				+0.1
1,392,096	+		Atu1397	0.17	+0.4
1,392,147	-		Atu1397	0.24	-0.0
1,392,187	+		Atu1397	0.31	+0.1
1,392,195	-		Atu1397	0.32	+0.1
1,392,316	+		Atu1397	0.50	+0.5
1,392,324	-		Atu1397	0.52	-0.3
1,392,324	-		Atu1397	0.52	-0.0
1,392,355	-		Atu1397	0.56	+0.9
1,392,373	+		Atu1397	0.59	-0.1
1,392,381	-		Atu1397	0.60	-0.2
1,392,453	+		Atu1397	0.71	+1.9
1,392,453	+		Atu1397	0.71	+0.7
1,392,473	+		Atu1397	0.74	+0.4
1,392,481	-		Atu1397	0.76	+0.1
1,392,588	-				-0.2
1,392,629	-				-0.3
1,392,707	-				+0.1
1,392,977	+		Atu1398	0.48	-0.2
1,392,980	-		Atu1398	0.48	+0.5
1,393,037	+		Atu1398	0.56	-0.3
1,393,045	-		Atu1398	0.57	+1.2
1,393,074	-		Atu1398	0.62	-0.1
1,393,156	-		Atu1398	0.73	-1.0
1,393,367	+				-0.0
1,393,367	+				+0.1
1,393,375	-				+0.1
1,393,375	-				-0.4
1,393,431	+				+0.2
1,393,455	-				+0.9
1,393,559	+		Atu1399	0.18	+0.3
1,393,559	+		Atu1399	0.18	-0.0
1,393,570	-		Atu1399	0.20	+0.4