Strain Fitness in Agrobacterium fabrum C58 around Atu1226

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,216,651	-				-0.1
1,216,667	+				+1.4
1,216,686	+				-0.3
1,216,686	-				-0.2
1,216,725	+				+0.6
1,216,801	-				+0.6
1,216,852	+				+0.3
1,216,908	+				-0.2
1,216,908	+				+0.0
1,216,916	-				+0.0
1,217,037	-				+0.1
1,217,395	+				-0.0
1,217,413	-		Atu1225	0.15	-0.5
1,217,475	-		Atu1225	0.37	+0.2
1,217,517	-		Atu1225	0.53	-1.4
1,217,647	+				+0.9
1,217,675	+				+0.4
1,217,680	+				-0.1
1,217,697	+				+0.0
1,217,705	-				+0.1
1,217,705	-				-0.2
1,217,705	-				-0.1
1,217,718	-		Atu1226	0.10	+0.6
1,217,841	-		Atu1226	0.29	+0.0
1,217,915	+		Atu1226	0.41	-0.1
1,217,920	+		Atu1226	0.42	+0.6
1,217,953	+		Atu1226	0.47	+0.6
1,218,058	-		Atu1226	0.63	-0.0
1,218,089	+		Atu1226	0.68	+0.2
1,218,257	-				+0.6
1,218,319	+				-0.5
1,218,400	+				+0.6
1,218,535	+				+0.3
1,218,684	-				+0.6
1,218,696	-				-0.7
1,218,696	-				-0.2
1,218,820	+				+0.2
1,218,944	-		Atu1227	0.24	-0.3
1,219,174	-		Atu1227	0.63	-0.3
1,219,174	-		Atu1227	0.63	-0.3
1,219,197	+		Atu1227	0.67	+0.3
1,219,197	+		Atu1227	0.67	-0.1
1,219,205	-		Atu1227	0.68	+0.2
1,219,207	+		Atu1227	0.69	-0.1
1,219,207	+		Atu1227	0.69	+1.2
1,219,215	-		Atu1227	0.70	-0.1
1,219,215	-		Atu1227	0.70	-0.5