Strain Fitness in Agrobacterium fabrum C58 around Atu1220

Experiment: Indole-3-butyric 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-butyric 5 mM
1,213,219	+		Atu1218	0.77	+1.8
1,213,219	+		Atu1218	0.77	+1.6
1,213,251	-		Atu1218	0.79	-0.4
1,213,300	+		Atu1218	0.82	-0.3
1,213,320	-		Atu1218	0.84	-0.0
1,213,364	+		Atu1218	0.87	+0.2
1,213,364	+		Atu1218	0.87	-0.7
1,213,417	-				-0.5
1,213,550	+				-0.2
1,213,558	+				+0.4
1,213,566	-				-0.7
1,213,577	-				-0.1
1,213,577	-				+0.1
1,213,584	+				-0.2
1,213,714	+				-0.2
1,213,722	-				+0.4
1,213,804	-		Atu1219	0.26	-0.6
1,213,976	+		Atu1219	0.84	-0.9
1,213,994	-				+0.0
1,214,112	-				+0.4
1,214,130	+				+0.6
1,214,130	+				-0.1
1,214,138	-				+0.7
1,214,138	-				-0.1
1,214,188	-				+0.0
1,214,268	+		Atu1220	0.17	+0.8
1,214,272	-		Atu1220	0.18	+0.3
1,214,357	-		Atu1220	0.33	+0.1
1,214,435	-		Atu1220	0.47	-0.1
1,214,443	+		Atu1220	0.49	+1.0
1,214,461	-		Atu1220	0.52	-0.0
1,214,550	+		Atu1220	0.68	+0.3
1,214,550	+		Atu1220	0.68	+0.0
1,214,563	-		Atu1220	0.70	-0.6
1,214,641	-		Atu1220	0.84	+1.2
1,214,722	-				+1.1
1,214,821	+				-0.1
1,214,990	+		Atu1221	0.33	-0.0
1,215,000	+		Atu1221	0.35	+0.4
1,215,015	+		Atu1221	0.39	-0.5
1,215,017	-		Atu1221	0.39	-0.0
1,215,059	+		Atu1221	0.49	-0.6
1,215,067	-		Atu1221	0.50	+0.3
1,215,129	-		Atu1221	0.64	-0.3
1,215,211	-		Atu1221	0.83	-0.8
1,215,322	+				+0.5
1,215,330	-				-0.0
1,215,330	-				+0.3
1,215,349	-				-0.3
1,215,437	-				-0.2
1,215,437	-				+0.4
1,215,437	-				-1.0
1,215,512	+		Atu1222	0.12	+0.1
1,215,520	-		Atu1222	0.13	-0.3
1,215,544	+		Atu1222	0.16	+0.2
1,215,557	+		Atu1222	0.18	-0.0
1,215,609	+		Atu1222	0.25	+0.0
1,215,614	+		Atu1222	0.26	-0.4
1,215,617	-		Atu1222	0.26	+0.5
1,215,625	+		Atu1222	0.27	-0.1