Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0933 and Atu0934 are separated by 27 nucleotides Atu0934 and Atu0935 overlap by 4 nucleotides Atu0935 and Atu0936 are separated by 107 nucleotides Atu0936 and Atu0937 are separated by 235 nucleotides
Atu0933: Atu0933 - beta-lactamase class D, at 923,289 to 924,113
Atu0933
Atu0934: Atu0934 - hypothetical protein, at 924,141 to 924,476
Atu0934
Atu0935: Atu0935 - hypothetical protein, at 924,473 to 924,748
Atu0935
Atu0936: Atu0936 - methyltransferase, at 924,856 to 925,464
Atu0936
Atu0937: Atu0937 - copper transporting ATPase, at 925,700 to 928,225
Atu0937
Position (kb) 924
925
926 Strain fitness (log2 ratio) -1
0
1 at 923.994 kb on + strand, within Atu0933 at 923.994 kb on + strand, within Atu0933 at 924.036 kb on + strand at 924.058 kb on - strand at 924.208 kb on + strand, within Atu0934 at 924.208 kb on + strand, within Atu0934 at 924.216 kb on - strand, within Atu0934 at 924.259 kb on - strand, within Atu0934 at 924.272 kb on + strand, within Atu0934 at 924.280 kb on - strand, within Atu0934 at 924.280 kb on - strand, within Atu0934 at 924.343 kb on - strand, within Atu0934 at 924.407 kb on + strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.415 kb on - strand, within Atu0934 at 924.443 kb on - strand at 924.507 kb on + strand, within Atu0935 at 924.675 kb on - strand, within Atu0935 at 924.685 kb on - strand, within Atu0935 at 924.706 kb on - strand, within Atu0935 at 924.756 kb on - strand at 924.758 kb on + strand at 924.758 kb on + strand at 924.758 kb on + strand at 924.766 kb on - strand at 924.766 kb on - strand at 924.775 kb on + strand at 924.874 kb on - strand at 924.890 kb on + strand at 925.048 kb on + strand, within Atu0936 at 925.267 kb on + strand, within Atu0936 at 925.312 kb on + strand, within Atu0936 at 925.354 kb on + strand, within Atu0936 at 925.362 kb on - strand, within Atu0936 at 925.404 kb on + strand at 925.414 kb on + strand at 925.465 kb on + strand at 925.470 kb on + strand at 925.470 kb on + strand at 925.478 kb on - strand at 925.478 kb on - strand at 925.480 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.619 kb on + strand at 925.627 kb on - strand at 925.747 kb on + strand at 925.912 kb on + strand at 925.920 kb on - strand at 925.927 kb on + strand at 925.935 kb on - strand at 925.957 kb on - strand, within Atu0937 at 925.972 kb on + strand, within Atu0937 at 926.046 kb on - strand, within Atu0937 at 926.046 kb on - strand, within Atu0937 at 926.061 kb on + strand, within Atu0937 at 926.074 kb on - strand, within Atu0937 at 926.119 kb on + strand, within Atu0937 at 926.126 kb on + strand, within Atu0937 at 926.174 kb on + strand, within Atu0937 at 926.216 kb on - strand, within Atu0937 at 926.302 kb on - strand, within Atu0937 at 926.319 kb on - strand, within Atu0937 at 926.457 kb on + strand, within Atu0937
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 923,994 + Atu0933 0.85 -0.3 923,994 + Atu0933 0.85 +0.0 924,036 + -0.3 924,058 - +0.4 924,208 + Atu0934 0.20 +0.1 924,208 + Atu0934 0.20 -0.3 924,216 - Atu0934 0.22 +0.2 924,259 - Atu0934 0.35 -1.5 924,272 + Atu0934 0.39 -0.2 924,280 - Atu0934 0.41 +0.2 924,280 - Atu0934 0.41 -0.4 924,343 - Atu0934 0.60 +0.3 924,407 + Atu0934 0.79 -0.5 924,415 - Atu0934 0.82 +0.3 924,415 - Atu0934 0.82 -0.6 924,415 - Atu0934 0.82 -0.3 924,443 - -0.0 924,507 + Atu0935 0.12 -0.6 924,675 - Atu0935 0.73 -0.1 924,685 - Atu0935 0.77 +0.0 924,706 - Atu0935 0.84 -0.4 924,756 - +0.2 924,758 + -0.4 924,758 + -0.6 924,758 + -0.7 924,766 - +0.6 924,766 - -0.5 924,775 + -0.0 924,874 - -0.1 924,890 + +0.5 925,048 + Atu0936 0.32 +0.2 925,267 + Atu0936 0.67 -0.1 925,312 + Atu0936 0.75 +0.5 925,354 + Atu0936 0.82 +0.7 925,362 - Atu0936 0.83 +0.3 925,404 + -0.9 925,414 + +0.2 925,465 + -0.2 925,470 + -0.1 925,470 + +0.7 925,478 - +1.1 925,478 - -1.1 925,480 - -0.3 925,584 + +1.0 925,584 + +0.9 925,619 + -0.1 925,627 - -1.2 925,747 + -0.2 925,912 + -0.4 925,920 - +0.4 925,927 + +0.7 925,935 - +0.3 925,957 - Atu0937 0.10 +0.8 925,972 + Atu0937 0.11 -0.0 926,046 - Atu0937 0.14 -0.8 926,046 - Atu0937 0.14 +0.2 926,061 + Atu0937 0.14 +0.4 926,074 - Atu0937 0.15 -0.4 926,119 + Atu0937 0.17 -0.7 926,126 + Atu0937 0.17 +0.2 926,174 + Atu0937 0.19 +0.1 926,216 - Atu0937 0.20 +0.0 926,302 - Atu0937 0.24 +0.5 926,319 - Atu0937 0.25 -0.0 926,457 + Atu0937 0.30 +0.5
Or see this region's nucleotide sequence