Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0748 and Atu0749 are separated by 25 nucleotides Atu0749 and Atu0750 are separated by 5 nucleotides Atu0750 and Atu0751 overlap by 4 nucleotides Atu0751 and Atu0752 are separated by 112 nucleotides
Atu0748: Atu0748 - deacetylase, at 746,187 to 747,122
Atu0748
Atu0749: Atu0749 - biotin synthesis BioY protein, at 747,148 to 747,711
Atu0749
Atu0750: Atu0750 - ABC transporter, membrane spanning protein, at 747,717 to 748,349
Atu0750
Atu0751: Atu0751 - ABC transporter, nucleotide binding/ATPase protein (cobalt), at 748,346 to 749,026
Atu0751
Atu0752: Atu0752 - hypothetical protein, at 749,139 to 750,335
Atu0752
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 746.719 kb on + strand, within Atu0748 at 746.721 kb on - strand, within Atu0748 at 746.745 kb on + strand, within Atu0748 at 746.869 kb on + strand, within Atu0748 at 746.973 kb on + strand, within Atu0748 at 746.981 kb on - strand, within Atu0748 at 747.074 kb on - strand at 747.091 kb on - strand at 747.254 kb on + strand, within Atu0749 at 747.288 kb on + strand, within Atu0749 at 747.296 kb on - strand, within Atu0749 at 747.418 kb on + strand, within Atu0749 at 747.509 kb on - strand, within Atu0749 at 747.588 kb on - strand, within Atu0749 at 747.603 kb on + strand, within Atu0749 at 747.659 kb on - strand at 747.747 kb on + strand at 747.747 kb on + strand at 747.839 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.889 kb on - strand, within Atu0750 at 747.891 kb on - strand, within Atu0750 at 747.928 kb on - strand, within Atu0750 at 747.952 kb on + strand, within Atu0750 at 747.960 kb on - strand, within Atu0750 at 747.970 kb on - strand, within Atu0750 at 747.992 kb on + strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.000 kb on - strand, within Atu0750 at 748.029 kb on + strand, within Atu0750 at 748.050 kb on - strand, within Atu0750 at 748.084 kb on + strand, within Atu0750 at 748.113 kb on + strand, within Atu0750 at 748.121 kb on - strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.259 kb on + strand, within Atu0750 at 748.267 kb on - strand, within Atu0750 at 748.296 kb on - strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.368 kb on - strand at 748.374 kb on + strand at 748.436 kb on + strand, within Atu0751 at 748.505 kb on - strand, within Atu0751 at 748.627 kb on + strand, within Atu0751 at 748.835 kb on + strand, within Atu0751 at 748.864 kb on + strand, within Atu0751 at 748.913 kb on - strand, within Atu0751 at 748.935 kb on + strand, within Atu0751 at 748.954 kb on + strand, within Atu0751 at 749.035 kb on - strand at 749.052 kb on + strand at 749.060 kb on - strand at 749.230 kb on - strand at 749.246 kb on - strand at 749.284 kb on + strand, within Atu0752 at 749.284 kb on + strand, within Atu0752
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 746,719 + Atu0748 0.57 -0.2 746,721 - Atu0748 0.57 +1.5 746,745 + Atu0748 0.60 -0.5 746,869 + Atu0748 0.73 -0.0 746,973 + Atu0748 0.84 +0.1 746,981 - Atu0748 0.85 -0.3 747,074 - +0.1 747,091 - +0.7 747,254 + Atu0749 0.19 -0.9 747,288 + Atu0749 0.25 -0.6 747,296 - Atu0749 0.26 -2.0 747,418 + Atu0749 0.48 -3.5 747,509 - Atu0749 0.64 -0.6 747,588 - Atu0749 0.78 -1.1 747,603 + Atu0749 0.81 -0.0 747,659 - -2.0 747,747 + -0.0 747,747 + -1.4 747,839 - Atu0750 0.19 -1.3 747,889 - Atu0750 0.27 -2.0 747,889 - Atu0750 0.27 -1.5 747,891 - Atu0750 0.27 -0.1 747,928 - Atu0750 0.33 -1.1 747,952 + Atu0750 0.37 -1.2 747,960 - Atu0750 0.38 -1.2 747,970 - Atu0750 0.40 -0.6 747,992 + Atu0750 0.43 -1.7 748,000 - Atu0750 0.45 -1.7 748,000 - Atu0750 0.45 -1.6 748,029 + Atu0750 0.49 -2.2 748,050 - Atu0750 0.53 -0.9 748,084 + Atu0750 0.58 -1.3 748,113 + Atu0750 0.63 -1.3 748,121 - Atu0750 0.64 -1.6 748,142 + Atu0750 0.67 -2.4 748,142 + Atu0750 0.67 -1.5 748,199 + Atu0750 0.76 -1.9 748,199 + Atu0750 0.76 -1.3 748,207 - Atu0750 0.77 +0.3 748,207 - Atu0750 0.77 -1.8 748,207 - Atu0750 0.77 -0.6 748,207 - Atu0750 0.77 -0.2 748,209 + Atu0750 0.78 -1.6 748,209 + Atu0750 0.78 -1.6 748,217 - Atu0750 0.79 -1.5 748,217 - Atu0750 0.79 -1.1 748,259 + Atu0750 0.86 +0.5 748,267 - Atu0750 0.87 -2.3 748,296 - -0.3 748,360 + -0.0 748,360 + -0.4 748,360 + -0.1 748,368 - -0.3 748,374 + -1.1 748,436 + Atu0751 0.13 -1.8 748,505 - Atu0751 0.23 -0.9 748,627 + Atu0751 0.41 -1.7 748,835 + Atu0751 0.72 -0.0 748,864 + Atu0751 0.76 -2.0 748,913 - Atu0751 0.83 -1.5 748,935 + Atu0751 0.86 -0.8 748,954 + Atu0751 0.89 -3.2 749,035 - +0.0 749,052 + -1.0 749,060 - -0.1 749,230 - +0.3 749,246 - +0.3 749,284 + Atu0752 0.12 -0.2 749,284 + Atu0752 0.12 +0.3
Or see this region's nucleotide sequence