Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8121 and Atu0418 are separated by 49 nucleotides Atu0418 and Atu0419 are separated by 198 nucleotides
Atu8121: Atu8121 - hypothetical protein, at 412,452 to 413,651
Atu8121
Atu0418: Atu0418 - hypothetical protein, at 413,701 to 414,582
Atu0418
Atu0419: Atu0419 - two component sensor kinase, at 414,781 to 416,082
Atu0419
Position (kb) 413
414
415 Strain fitness (log2 ratio) -1
0
1
2 at 412.711 kb on - strand, within Atu8121 at 412.713 kb on + strand, within Atu8121 at 412.713 kb on + strand, within Atu8121 at 412.721 kb on - strand, within Atu8121 at 412.723 kb on + strand, within Atu8121 at 412.723 kb on + strand, within Atu8121 at 412.731 kb on - strand, within Atu8121 at 412.731 kb on - strand, within Atu8121 at 412.851 kb on + strand, within Atu8121 at 412.857 kb on + strand, within Atu8121 at 412.910 kb on - strand, within Atu8121 at 412.941 kb on - strand, within Atu8121 at 413.021 kb on + strand, within Atu8121 at 413.024 kb on - strand, within Atu8121 at 413.074 kb on - strand, within Atu8121 at 413.092 kb on + strand, within Atu8121 at 413.092 kb on + strand, within Atu8121 at 413.100 kb on - strand, within Atu8121 at 413.100 kb on - strand, within Atu8121 at 413.170 kb on + strand, within Atu8121 at 413.341 kb on - strand, within Atu8121 at 413.398 kb on - strand, within Atu8121 at 413.525 kb on + strand, within Atu8121 at 413.536 kb on - strand at 413.585 kb on + strand at 413.681 kb on + strand at 413.772 kb on - strand at 413.772 kb on - strand at 413.824 kb on + strand, within Atu0418 at 413.837 kb on - strand, within Atu0418 at 413.856 kb on - strand, within Atu0418 at 413.861 kb on + strand, within Atu0418 at 413.990 kb on + strand, within Atu0418 at 414.036 kb on + strand, within Atu0418 at 414.044 kb on - strand, within Atu0418 at 414.119 kb on + strand, within Atu0418 at 414.127 kb on - strand, within Atu0418 at 414.210 kb on + strand, within Atu0418 at 414.250 kb on - strand, within Atu0418 at 414.255 kb on - strand, within Atu0418 at 414.319 kb on - strand, within Atu0418 at 414.383 kb on + strand, within Atu0418 at 414.384 kb on - strand, within Atu0418 at 414.391 kb on - strand, within Atu0418 at 414.429 kb on - strand, within Atu0418 at 414.488 kb on + strand, within Atu0418 at 414.555 kb on - strand at 414.629 kb on + strand at 414.637 kb on - strand at 414.723 kb on - strand at 414.956 kb on + strand, within Atu0419 at 415.014 kb on + strand, within Atu0419 at 415.033 kb on + strand, within Atu0419
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 412,711 - Atu8121 0.22 -0.2 412,713 + Atu8121 0.22 +1.9 412,713 + Atu8121 0.22 +0.1 412,721 - Atu8121 0.22 +0.2 412,723 + Atu8121 0.23 +0.0 412,723 + Atu8121 0.23 -0.1 412,731 - Atu8121 0.23 +0.3 412,731 - Atu8121 0.23 +2.0 412,851 + Atu8121 0.33 +0.3 412,857 + Atu8121 0.34 +0.2 412,910 - Atu8121 0.38 -0.0 412,941 - Atu8121 0.41 -0.5 413,021 + Atu8121 0.47 +0.2 413,024 - Atu8121 0.48 +0.6 413,074 - Atu8121 0.52 +0.6 413,092 + Atu8121 0.53 +0.1 413,092 + Atu8121 0.53 +0.0 413,100 - Atu8121 0.54 -0.0 413,100 - Atu8121 0.54 -0.3 413,170 + Atu8121 0.60 +0.9 413,341 - Atu8121 0.74 +1.2 413,398 - Atu8121 0.79 -0.6 413,525 + Atu8121 0.89 +0.4 413,536 - -0.6 413,585 + +0.1 413,681 + +0.1 413,772 - -0.0 413,772 - -0.2 413,824 + Atu0418 0.14 +0.0 413,837 - Atu0418 0.15 -0.3 413,856 - Atu0418 0.18 -0.0 413,861 + Atu0418 0.18 -0.1 413,990 + Atu0418 0.33 +0.2 414,036 + Atu0418 0.38 +0.5 414,044 - Atu0418 0.39 +0.1 414,119 + Atu0418 0.47 +0.2 414,127 - Atu0418 0.48 +0.7 414,210 + Atu0418 0.58 -0.1 414,250 - Atu0418 0.62 +1.1 414,255 - Atu0418 0.63 -0.6 414,319 - Atu0418 0.70 +0.8 414,383 + Atu0418 0.77 +1.7 414,384 - Atu0418 0.77 +0.7 414,391 - Atu0418 0.78 +0.3 414,429 - Atu0418 0.83 +0.4 414,488 + Atu0418 0.89 +1.2 414,555 - +0.3 414,629 + -0.4 414,637 - -0.2 414,723 - -0.6 414,956 + Atu0419 0.13 -0.4 415,014 + Atu0419 0.18 +0.0 415,033 + Atu0419 0.19 +0.0
Or see this region's nucleotide sequence